AMCG00002491 (zdhhc3,LOC103144443)


Basic Information

Item Value
gene id AMCG00002491
gene name zdhhc3,LOC103144443
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16792556 ~ 16813272 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002491
ATGCAGGAAGACGTATATGAGTGCACGTCCAAATGTGTCATGCAATTGAAAGGTGAGCTGTGGCGATGGAGCACGACTCTTAGGATGCGGAGCCCGGCGCACCGCTGCAGGGACATCGAGAGGCAAGCCGGCTACCTGCAGCCCGAGCACTGCGCGCCTCCCCCGCCTCGTCCCCGCTCCGGCACCATGTGGTTTATCCGGGACGGCTGCGGCATCGTGTGCGGGGTCATCACCTGGATGCTGGTGTTCTATGCCGAGTTCGTGGTGCTCTTCGTGATGCTGCTTCCCTCCAAGAGCATAGCCTACAGCCTGGTGAACGGAGCGCTCTTCAACAGCCTGGCCTTCCTCGCCCTCGCCTCTCACTTCAGGGCTATGCTGACCGACCCCGGAGCAGTGCCAAAGGGAAATGCCACCAAGGAGTTCATCGAGAGTCTTCAGCTAAAGCCTGGCCAGGTGGTGTACAAGTGTCCCAAGTGCTGCAGCATCAAGCCCGACCGAGCGCATCACTGCAGTGTCTGCAAGCGATGTATTCGGAAGATGGACCACCACTGCCCCTGGGTGAATAACTGTGTGGGGGAGAACAACCAGAAGTACTTTGTTCTGTTTACAatgtaTATAGCACTGATCTCGCTGCACGCCCTTATGATGgtagcatttcattttctgtattgcttCGAGGAAGACTGGACAATGTGTCGGTGTGCAGCGAGCGTGACCCCCCGGGCTCAGCGCACCCTGtgtaaatgtctgtgtgtttcccCAGAGTGCAGTACCTTCTCGCCTCCAGCGACAGTCATCCTGCTCATCCTCTTGTGTTTTGAGGGGCTCCTTTTCCTAATTTTCACATCTGTGATGTTTGGGACCCAAATCCATTCAATCTGTACCGATGAAACAGGGATAGAGCAGTtgaaaaaggaagagagaagaTGGGCAAAAAAAACTAAGTGGATGAACATGAAGGCGGTGTTCGGACACCCCTTTTCTATAGCGTGGCTTAGCCCGTTCGCAACGCCTGACCATGGCAAGGCTGACCCTTATCAGTACGTTGTCGATGCTTTCTATGTAAAGGATCTTACGGTGGTATTCTCGTCCCAGGGCATTGAGCGGCTGAAGGGAGAGACCCCCACCTGGCAGAAGACCCCGTGCTGGGAGGGCATGAAAGCAGCGTTCGGTGGTCCGCTGTCACTGGGCTGGTTTAACCCCTTCTCCGACCTGAGCTGTGAGAAGAGGCAGTCCTCCCGTGTACACGCCGCCCCCCAGGGCGAAATCGTGGAGGAGGATGTTATTGAAATACAGGCTGAATATTGA

Function

symbol description
zdhhc3 Enables palmitoyltransferase activity. Involved in several processes, including TRAIL-activated apoptotic signaling pathway; protein localization to membrane; and protein localization to photoreceptor outer segment. Located in Golgi apparatus.

NR:

description
PREDICTED: palmitoyltransferase ZDHHC3

GO: NA

KEGG:

id description
K20029 ZDHHC3_7_25; palmitoyltransferase ZDHHC3/7/25

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002491 True 1308 mRNA 0.55 8 16792556 16813272

Neighbor

gene id symbol gene type direction distance location
AMCG00002486 NA coding downstream 39060 16752548 ~ 16753496 (-)
AMCG00002488 NA coding downstream 58033 16689836 ~ 16734523 (-)
AMCG00002487 NA coding downstream 119977 16658898 ~ 16672579 (-)
AMCG00002481 NA coding downstream 209656 16568336 ~ 16582900 (-)
AMCG00002477 NA coding downstream 637991 16129440 ~ 16154565 (-)
AMCG00002490 NA coding upstream 10957 16824229 ~ 16831271 (-)
AMCG00002492 tmem158,LOC102794155 coding upstream 34152 16847424 ~ 16848116 (-)
AMCG00002505 NA coding upstream 208147 17021419 ~ 17052806 (-)
AMCG00002504 NA coding upstream 250135 17063407 ~ 17071925 (-)
AMCG00002508 mturn,LOC107572558,LOC107559763 coding upstream 267232 17080504 ~ 17090314 (-)
G123527 NA non-coding downstream 137693 16653499 ~ 16654863 (-)
G123524 stt3b,LOC108412618 non-coding downstream 141102 16648407 ~ 16651454 (-)
G123489 NA non-coding downstream 309505 16481568 ~ 16483051 (-)
G123488 NA non-coding downstream 312263 16480029 ~ 16480293 (-)
G123452 NA non-coding downstream 665151 16124282 ~ 16127405 (-)
G123637 NA non-coding upstream 167559 16980831 ~ 16982646 (-)
G123642 NA non-coding upstream 181857 16995129 ~ 17050056 (-)
G123646 NA non-coding upstream 262040 17075312 ~ 17075549 (-)
G123705 NA non-coding upstream 421098 17234370 ~ 17238544 (-)
G123788 NA non-coding upstream 846795 17660067 ~ 17675110 (-)
G123263 NA other downstream 1846245 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 3138309 13649227 ~ 13654247 (-)
G122862 NA other downstream 3763150 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 4786204 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 4919694 11869607 ~ 11872862 (-)
G123585 NA other upstream 22884 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 144890 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 876736 17690008 ~ 17706289 (-)
G123829 NA other upstream 1109180 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 1120192 17933464 ~ 18041573 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000319_00918165_00926490 ZDHHC3B, ZDHHC3, MGC82349, ZDHHC3A, ZDHHC3.S coding CI01000319 null 917718 ~ 926490 (-)