AMCG00002611 (has2,LOC107673001,LOC107596747)


Basic Information

Item Value
gene id AMCG00002611
gene name has2,LOC107673001,LOC107596747
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22694206 ~ 22705745 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002611
aaaaaaaaaaaaaaaaaacctctacCAGTCAACTGACAGATGTATCACCATATATACATACctacagtatgtgtgtataatatatgagaagaaaacaagaaaaagaaaacttgaattaaaaaaaaaagcaaattaaaagaaaactttgGAAACTGCACTGCCTTGGAATTTGTGAAGTTTTCTGTGGGCTCTTACTAAATTGCCTCAAAGTCGCTTTTGAAAAGTCTGCCTGAACTCCAGTCCTGTAAAGACATCCTCTCCACACAGCCAGAAAGCTGCTTCCAAGaTGAGGTGTGATAAAATTATCACCTACTTGAGGATCTTCGGAACGACGATGTTTGGGGTGTCACTTCTCCTGGGAATCACTGCTGCCTATATCAAGGGCTACCAGTTCATCACAACAGACAATTACTATTTCTCCTTTGGACTTTACGGGGCTATCCTAGCCCTGCACCTCATCATCCAAAGCCTGTTCGCCTACTTGGAGCACAGGAAGATGCGGAGATCCCTGGAGACCCCcattaaactgaacaaaaccCTCGCCCTCTGCATCGCTGCTTATCAGGAAGACCCCAACTACCTGAGAAAGTGCTTGATTTCAGTCAAAAGGCTCACATACCctgggataaaggtgatcatgGTGATTGACGGTAATAACGAGGATGACAACTACATGATGGACATCTTCCGGGAGGTCATGGGGAGAGACGTGGCCGCTTCTTATGTTTGGAAAAGCAACTTTCACCACAAAGGCCCCGAAGAGACTGACCAGTCGCACTTGGAGAGCAAGCAGCATGTGAGCCGCTTGGTCTTGTCCAACAAATGTGTGTGCATCATGCAGAAATGGGGCGGAAAGCGAGAAGTAATGTACACTGCTTTCAAGGCCCTCGGGAGGAGTGTGGATTATGTGCAGGTGTGTGATTCAGACACCATGCTGGACCCTGCCTCATCTGTGGAAATGGTGAAAGTGCTCGAAGAAGACCCAATGGTGGGGGGAGTTGGGGGTGATGTCCAGATTCTGAACAAATACGAGTCCTGGATATCATTCCTGAGCAGTGTCAGGTACTGGATGGCTTTCAACATCGAGAGGGCCTGCCAGTCCTACTTCGGTTGTGTGCAGTGCATCAGTGGACCCCTAGGGATGTACCGCAATTCTCTCCTCCACGAGTTTCTGGAAGCCTGGTACAACCAAGAGTTCTTGGGCAGCCAATGCAGCTTTGGAGACGACCGGCACCTCACCAACCGGGTACTAAGCCTTGGATATGCCACCAAGTACACTGCTAGGTCCAAATGTTTAACAGAAACCCCAATCAAGTACCTACGGTGGCTGAACCAGCAGACACGGTGGAGTAAGTCCTACTTCCGAGAATGGCTGTACAATTCAATGTGGTTCCATAAACACCACCTGTGGATGACCTACGAAGCAGTGATCACTGGctttttccccttcttcctcATCGCTACGGTGATCCAGCTCTTCTACCGAGGCCGCATATGGAACATCCTGCTGTTCCTGTTGACCGTTCAGCTGGTAGGCCTCATCAAGTCGTCCTTCGCCAGCTGCCTCCGTGGAAACATCGTCATGGTGTTCATGTCATTCTACTCAGTGTTGTACATGTCAAGTCTGCTTCCGGCCAAGATGTTCGCAATTGCAACGATAAACAAAGCGGGCTGGGGGACGTCAGGGAGGAAAACGGTGGTGGTCAATTTCATAGGCCTCATTCCAATTTCGGTGTGGTTCTCCATCTTGTTCGGTGGAGTGCTCTACACAATATACCAAGAGACAAAAAAGCCATTTTCTGAGGCCGAACAGACTATTTTAATCATAGGTGCAATATTATATGCCAGCTACTGGGTAATGCTCTTGACATTGTACGTGGTGCTCATTACCAAGTGTGGGAGGAGGAAAAAAGAGCAGCAATACGACATGGTACTTGATGTATGATATCCTCCTTCCCCTCTTCATGTTTACATTGTGAAGTTCCTGACTTTTCATCAGAGGATGCTTGGCAGGTGACTGGTAGTGATGTCACCAGGAAAGACTAATCACTGCTGCTGTGACAAAAATCAAAGatgattacatttgttttttgttaaggTTGGGATAAATTTGCCAAAGTAGAACCTTGATTTAAAACCACCAAAAACAACTGACATGGAACTGGCATGAGTTTTAAATTCCTATGCACTTTCACGTTTCACTCTCATCGTGCATAATGCTTgacagattaaatgaaaaaatatatacctcaGTGGTTATGATTGCATTGTGTGGGTGAGTGGGAGGCTCATTgttgtttcaaataatttatctatgaaaataatgtgggtctgtttgtttacttgtatttttttttaaatagttctaATCTATGCCAAAGGTGGACTTTCCAGCAAGTTGGTCATGCTGTAGCtagttcatattttataattatgtgtatttgtattgcaattTATATAgacataatgtttatttttgcttagCCACCAAAGAGTTTctattttcattccttttttatataaaaataaatgaataaataaataaaattgtgcatgggcaactgttttgttgacaaaGACCTTTGTATCTGaccaaaaatgtgaaatgttatgCTGTGTTTTACGCGTTCGTAATTATAGCAATAAATGCAATTCAGAGAATAAATTATAAGTTAACAAGAAAGGTGATGAacctgtgttttaaatgtggtgTACATGGAGGGGAAAACAGCATATTTATGTTAAGAAGCCTTCTGTGGTTAATAGCTTTATTTACTGGAATAATGATATTGGAACAATTctgaatatttgaaaaacaggatTTTGCAGGATCACAGCTATTTGTTGGAAGAAATGTTTTGGGACTTTACAGGTCATATATAGAAGTATACTTCAGTATTTCTTTGCTGAAATAGCAGTGTAGAAGAAAGTGAAAGAGCCTTCAAGGAACCCTATGGTAAAGCAATAATAAAGGAGAATGCAAATTAACCATTAAAATCCTGGACAGAACCCAATTTTGcacaaaactaatttaaaaatttaACACAAATCAGGGTTTCCAAAGCTATCCACTAAACAATTTGCTCAATTCAGTGCTTGTGCaatgtgattattttgtaaatacaattttgaagaTAACTGAATGAAGAGGACTTTGATGACACTACATATTTTTACTGCCATTTGGATCATGATTTAGAGATTAAGAATTCTTTTTGTAAACGAAAacgatattttgttttgtttttgccaaacATACATAGGCAATATCGATATAAAGCACTTTTGTGATgtgcaaaaataaagatatgTTGCTTACTATgcaaatgtgtacatatttggttatttattcCCTAGTTGTCTGTAtgttatgtgtgtatttatttaaatagatgtttagacaatgtcaaacaaatCTTTCCAAGTCTCCCTCTACATTAGAAAGCAGAGAGCAAAT

Function

symbol description
has2 Predicted to enable hyaluronan synthase activity. Acts upstream of or within several processes, including ameboidal-type cell migration; circulatory system development; and fin regeneration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; mesoderm; pericardial region; presumptive paraxial mesoderm; and swim bladder bud. Orthologous to human HAS2 (hyaluronan synthase 2).

NR:

description
PREDICTED: hyaluronan synthase 2

GO:

id name namespace
GO:0021535 cell migration in hindbrain biological_process
GO:0001756 somitogenesis biological_process
GO:0035810 positive regulation of urine volume biological_process
GO:0070295 renal water absorption biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0003181 atrioventricular valve morphogenesis biological_process
GO:0030213 hyaluronan biosynthetic process biological_process
GO:0060030 dorsal convergence biological_process
GO:0001947 heart looping biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0050501 hyaluronan synthase activity molecular_function

KEGG:

id description
K00752 hasA; hyaluronan synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002611 True 3457 mRNA 0.41 4 22694206 22705745

Neighbor

gene id symbol gene type direction distance location
AMCG00002610 NA coding downstream 73962 22598624 ~ 22620244 (-)
AMCG00002608 LOC106606163,LOC106595977 coding downstream 125218 22561117 ~ 22568988 (-)
AMCG00002606 LOC106595460 coding downstream 304821 22381544 ~ 22389385 (-)
AMCG00002605 taf2 coding downstream 313414 22354118 ~ 22380792 (-)
AMCG00002603 NA coding downstream 345702 22323186 ~ 22348504 (-)
AMCG00002616 derl1,LOC107593655,LOC107736822,LOC107657695,LOC107699495 coding upstream 203445 22909190 ~ 22926813 (-)
AMCG00002615 NA coding upstream 249531 22955276 ~ 22958920 (-)
AMCG00002614 NA coding upstream 253970 22959715 ~ 22968693 (-)
AMCG00002617 NA coding upstream 265760 22971505 ~ 22986571 (-)
AMCG00002628 si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870 coding upstream 284508 22990253 ~ 22996520 (-)
G124591 NA non-coding downstream 40487 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 95651 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 255477 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 740535 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 768350 21925607 ~ 21925856 (-)
G124669 NA non-coding upstream 291074 22996819 ~ 22999108 (-)
G124765 NA non-coding upstream 950239 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 1167933 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1705284 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 1870420 24576165 ~ 24577131 (-)
AMCG00002596 NA other downstream 791609 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1015661 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4652633 17933464 ~ 18041573 (-)
G123829 NA other downstream 4704741 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 4987917 17690008 ~ 17706289 (-)
G124719 NA other upstream 380249 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 476176 23181921 ~ 23192656 (-)
G124829 NA other upstream 1555820 24261565 ~ 24261823 (-)
G124848 NA other upstream 1586042 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3561307 26267052 ~ 26279621 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010550 has2 coding NC_007127.7 CM002900.2 15369634 ~ 15387459 (-)
grasscarp (Ctenopharyngodon idella) CI01000016_06508677_06514489 HAS2 coding CI01000016 null 6508137 ~ 6514489 (-)