AMCG00002755 (jakmip3)


Basic Information

Item Value
gene id AMCG00002755
gene name jakmip3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1035547 ~ 1069394 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002755
GGTAAAGAAAATGTAGCTGGGAAACAGAAGGGAAGAGACGCCTCACACCTCAGAAGAAAGGGTTCTCCCGGCTGGGGGCCCCACCCTCTGGACCACCGTGTCACCATGTCAAAGAAGGGTGCCGGCAGCCGAGCTAAGGGAGACAGACCCGACGCCTTAGCTGCTTTACAAGCTGCCAATGAAGAGCTCAGGGCCAAACTGACAGACATCCAAATCGAACTCCAGCAAGAAAAGAGTAAGGTGAGCAAGTTGGAGAGGGAGAAAACCCAGGAGGTGAAGCACGAGCAGCACAAGTCCACCGTGGTGGTAACGGAGCTGAAGACCAAGCTCCACGAGGAGAAGATGAAGGAGCTCCACGGCATCCGGGAGACCCTCCTCCGGCAGCACGAGTCCGAGCTGCTGCGCGTCATCAAGATCAAGGACAGCGAGATCCAGCGGCTGCAGGCGCTCGTCAACGCCCTGCGCGACGGCTCCACCGACAAGGTGAAGACCGCGCTGTTCGCCGAGGCCCGGGAGGAGGCCCGGCGGGGCTTCGACGCGGAGAAGTCCAGGATGCAGCAGGAGATCTCCGAGCTCAAGGGGGTCAGGCGGCAGATGGAGGAGGCGCTGAGCGTGGTGATCCAGGCGGACAAGATCAAAGCGGCCGAGATCAGGAGTGTGTATCACCTCCACCAGGAGGAGATCTCCCGAATCAAGAGGGAGTGCGAGCGGGAGATACGCCGGCTGATGGATGAGATTAAGGTAAAAGACAGAGCAGTCTACGTGCTGGAAAGAGAGCTCGGGCTCCAAGCTGGGCAAACTCAGAGACTCCAGCTCCAAAAAGAGGCTCTAGATGAGCAGCTTGTCCAGTTCAGGGAGGCTGAGCGACACCTGGGTAGCCCGAAACGAGAGGCTCCTTATGCAAGCGGTGCAGGAGACGCCTCTGATCATTCAGGAAGTCCTGAACAGCAGTTGGATGAAAAGGACGCTCGGCGCTTCCAGCTTAAGATTGCCGAGCTGAGTGCCATCATACGCAAACTGGAGGACCGCAATGCACTCCTGTCTGAGGAAAGGAACGAACTGCTCAAGCGCCTGCGGGAGGCAGAGAGTCAGTACAAGCCGCTGCTGGATAAAAACCGGCGTCTCAGCAGGAAGAACGAGGAGCTGCTGCACGCTTTCCGACGCATGGAGAACAAACTGAAATTCGTCACCCAGGAGAACATGGAAATGAGAGAGCGGGTGGGGACCATCAGACGCCCCAGCTCCCTGAACGACCTCGACCAAAGTCAAGAAGAGCGAGAGATTGAATTCCTGAGGCTTCAAGTCCTTGAGCAGCAAAATATCATTGACGATTTGTCCAAGGCCCTGGAAACGGCTGGATATGTCAAGAGTGTTATAGAGCGTGACAAGCTTCTGAGGTACCGGCGCCAAAGGAAGAAAATCGTGAAGCCATGTAAGAAGCCGGTGGTAGAGACATTCTTCGGGTACGATGAAGACGCGTCCATAGACTCTGACGGCTCCTCCATCTCCTATCAGACGGACCGGACGCCCTGCACCCCCGATGATGATTTGGAAGAGGGCATGGCCAAAGAGGAAACAGAACTGCGCTTTCGACAGCTGACGATGGAGTACCAAGCATTGCAACGGGCGTATGCACTATTACAAGAGCAGGTCGGAGGATCGTTTGATGCAGAAAGAGAAGTGAAGGATATGAAGTGGATTGAGGAGAAACAGGCCCTGTATCGGAGAAATCAGGAACTTGTGGATAAGATTAAGCAGATGGAGACGGAGGAATCGCGCCTGAAACGTGACATCCAGGACATCAAAGACCAGAATGAACTTCTAGAGTTCCGTATTCTAGAACTTGAAGACATCGTCATCACAGAACTGATGAAACAGCTGGATATTTTAGGAGATAACGCCAACTTAACCAATGAGGAGCAAGTGGTTGTCATACAAGCACGGACCATTTTGACCTTAGCAGAAAAGTGGCTCCAGCAGATAGAAGTCACCAAATCAGCTCTGCAGCAGAAAATGCTGGACCTGGAAAACGAAAAGGAGCTTTTTAGTAAACAGAAAGGGTATCTGGACGAGGAACTGGACTACAGGAAACAGTCGATGGATCAAGCACACAAGCGGATCCTGGAACTGGAGGCGATGCTCTTCGACGCCCTGCGGCAGGAGGCCGGCGCGAAGATGTCCGAGCTGCTGTCGGAGGAGGAGCGCGAGACGCTGAAGGGCGCCGTGGAGCAGTGGAAGCGCCAGGTGATGAGCGAGCTGCGGGAGCGAGACGCGCAGATCCTGAGGGAGCGGATGGAGCTGGTCCACCACGCACAACAGAGAATTAAAGAGCTGGAAGAAAGAATAGAAGCACAGAAACGACAGATAAAGGAATTGGAAGAAAAGccTTCATTCTTTGGTCTTAGCTCTTCCAGGCAGCCACAGCAGGGGTTCAGAAATGGTGTGACCCTGAAGATGGATGACTTAGTGCTGCTGCACATCCTGCCAGTGCGATGCTGAGGGACGCCGCGCTCCTGGGATCACAATCTGAGGTTCACCCCTGTGGGTGAAGGTCCCAGGACACTCCCACACCAGGGAGAAGACACCAGAAGAATATGATGACTTGTTTTCGAACCAGCTGAGTAAAACTGCCAGTTTCCCTACGGACTGAAATCTTATCAACCAGGGCCTCCATCAGATGTCATTATTACTGTAttgttgtagtgtgtgtgtgtgtcggtggcGGGCGGTCACAGTAAACTAGGCAAGCGGCGCTTGGccagaagcaattaaaatgacGAGAGAATGTAGCCTGCATAATATCAGTTTTATtggtattatattattcttatcaCCATCTTATCATCATTGTATTTCTCTTAAAGTTTTCCTCTGTcccctttattttctcttcagagAACAAGGACCTCCTCTCATTTTGTGATtccacactacacaacactgtgTACGTGACAGCTATGCTAGCTGTGTGTCTCCCAGTCAGTTTGTGTCACTGGTGTGCATCGGTGCCCGTCACGAACGCATGCTTTAGCTGTGCAGTCTACTTCTGCAAAACGCACCAAGACTGGATGATATTGTTAAGAGATGTTTCATAGCTTGTCCGGGTGCAATGTTAGCAATGTTACCTCTCGCCACTGGTATGTAtgggtgtatgtatgtatttgtgtatttgtttttggaatCATGTTAGTTTGTaggtttttttgcttttcaataatcgtttatttattcagtaaaacaaaatccatcTATAAATGCAGTGTACTGGTCAAATAACGTATTAAGCATTCTTCAGCCACAAATGTGTCTCCATCATCCTTAATGATGGCCGTAGTTCATTGATCGTTGAAAGGAACTCGCCACTGTGTGATATCTGAATGGACACTGTAACAAATGTAAGAAAGTCTTCTCACATGATTTCCATTCAGACTACTCTTCATTTGTTGTATTCATTGATACACTCTGTATTGGTTGCTTAATCGGTGTGTTCATCTCTTCTTTCTGTTCTGATATCATAAGCAGACCAATCCATCCCGGTATGAGCTCTGTTGTAACTAATGTCTATGTGTCTGCTGTTAAAATAAGTGGCTGTGGTTTGGATCGCCTTCGGATATTTGTGAACATTTACTCTAAGAAAGCTAACTGTTCAATAGAGTGATTGAATGTACTATGCAGGCACTTTTAAAACTGccttaattcaaattatttttatgaggACCTTAAGTCATTGGCCTGCttgaagaaaatgaataaacacaaacgGCTCTGCTGCGAATGGTGCGACATGTTTTTGCACGGACAGTTTATTTTGGTACAGCACATGatgcattttttgtataatCTGATGCGAAGGCGAGTAATTTTAAAGCTACCACATCTCATTTATTACTCAGGCCATGCCTTTGCatgttgtatatatgtatatcatggTCTCATTCAACAGTATTTTgcacaggaagaaaaaacaccaacaacaacaaaaatcttgGCTAccattataaagaaaatattgatcaaAGGAGAACATGTATAGAAACAAGGCATGTAATAAAGAATGGTGACTTGtaccaaaatataatatttatatgtacaaaAGAGATAtttgtatagaattgtataatgGCCAAATGTATTCCTTTATGTCATTCTCACCAAATCTTAGTCATATGGCGCTCAAAAACACttgcatatattttgaaacattattattttgttctgagGGTGAGTACAGGAAACGTACATTAGACTGAAGCAGAGTGACATTTGGGGTAGCAGTTAAAAGTCAGTGTCCTTTTACTGAATTAAGTTAATTACCAGAAAATGGCTCCCGTCGTTTTAAAGTGTCTTCTTGCATTGTGTAAACTGGGTATCATGCAATCAAGAGAACACATCTGAAAGTTGAGATGTTGTCTCTGTGGTCAAGCATCATAGCATCTCTCTGTTTTTGAGGAAAGGGAGGTTTAAGAAAAAATCAGTCCCCAGAGCAGAAAAAAGTGTATGTTACTGGAGTCTAGATACACAAACAAGAGAACATGTTATGAAGAAACGAGAACGAAAAGGGAAATAAAGCTTGAAACATGTTTCCCCAAAATCAGTGTTATcaaatgctgttttgtttgtatttcctttGTAATATGCAAGTATTTCTGAGTTTGTCTAAACTAAAATCCATTTGAACTTCAAACTCCAATAGCTGACAGCTGGTCTCTGTGTTATGATGTGTATTGCAAAGTGTAAACATATTGTTCAAGCTGTTAAAGGACAGTAGCTGTTATTTGAAGTATTATGAACAATAATGAAAGCCTTCACTAAACCCCTGAGTGCCTTACACAGCTtgataacaaatacattttaaccttCTTTCAACTTATGTATTTGGTGTAGTGCAAGATCTCTTACACATTCTGGCAACAACGAGCCAGGATTTAACGGCGCCGTGTCAGCACTTCAATGAATAGGTTACCTATAGACTTTATGGATTTAGTTTAGACTCAGGAAACCATAttgtgaatatttgtattaaatcatgattatttattgtatattttataaaaagggTCTATTGTAAATTTATGCAAGAATAAAAAAGGACAAAGACGTTTTAGCTTCTGTCTAAAATGGCCAAaactatgtaatttgtttatgtgATCTGCGTTATAATCTCACCACACTCATAtcctaaatatttaatgttgggTTAAGTGATAAACCAGTAATTGTCAACCCTTAAACCAGGACTATTTGTTGATCAGCTACAAAATTTtacacatatttttgtattgtgatCCATGTATATTAGATATTTCTattcatttgtaaaatgcatatattattgtaatttttttaataaaacgttattgtttta

Function

symbol description
jakmip3 Predicted to enable kinase binding activity and microtubule binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human JAKMIP3 (Janus kinase and microtubule interacting protein 3).

NR:

description
PREDICTED: janus kinase and microtubule-interacting protein 3 isoform X5

GO: NA

KEGG:

id description
K24785 JAKMIP3; janus kinase and microtubule-interacting protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002755 True 5365 mRNA 0.45 21 1035547 1069394

Neighbor

gene id symbol gene type direction distance location
AMCG00002756 NA coding downstream 948 1033446 ~ 1034599 (-)
AMCG00002754 dpysl4,LOC107582189,LOC107653119,LOC107706606,LOC107654562 coding downstream 3683 1020313 ~ 1031864 (-)
AMCG00002749 NA coding downstream 83851 944861 ~ 951696 (-)
AMCG00002751 p4ha1,LOC106578992 coding downstream 116072 910725 ~ 919475 (-)
AMCG00002750 NA coding downstream 128101 904455 ~ 907446 (-)
AMCG00002758 ppp2r2d,LOC105009682 coding upstream 25601 1094995 ~ 1103898 (-)
AMCG00002764 glrx3,LOC102791736 coding upstream 325617 1395011 ~ 1410128 (-)
AMCG00002767 mgmt coding upstream 471792 1541186 ~ 1551984 (-)
AMCG00002769 NA coding upstream 849646 1919040 ~ 1944943 (-)
AMCG00002768 NA coding upstream 880989 1950383 ~ 1968438 (-)
G138430 NA non-coding downstream 137130 895012 ~ 898417 (-)
G138373 NA non-coding downstream 230392 803573 ~ 805155 (-)
G138371 NA non-coding downstream 233780 801214 ~ 801767 (-)
G138352 NA non-coding downstream 287078 747494 ~ 748469 (-)
G138324 NA non-coding downstream 551944 483224 ~ 483603 (-)
G138535 NA non-coding upstream 420168 1489562 ~ 1518053 (-)
G138559 NA non-coding upstream 863966 1933360 ~ 1933995 (-)
G138594 NA non-coding upstream 1014504 2083898 ~ 2084097 (-)
G138678 NA non-coding upstream 1432719 2502113 ~ 2502314 (-)
G138720 NA non-coding upstream 1622036 2691430 ~ 2691869 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 110149 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 213956 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 846210 184121 ~ 189337 (-)
G138245 NA other downstream 888707 144926 ~ 146840 (-)
G138741 NA other upstream 1648814 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 2859367 3928761 ~ 3953324 (-)
G138932 NA other upstream 2932256 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 5993079 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 6279417 7348811 ~ 7352821 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005548 jakmip3 coding NC_007123.7 CM002896.2 41631521 ~ 41684729 (-)