RNA id: AMCG00002755


Basic Information

Item Value
RNA id AMCG00002755
length 5365
RNA type mRNA
GC content 0.45
exon number 21
gene id AMCG00002755
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1035547 ~ 1069394 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTAAAGAAAATGTAGCTGGGAAACAGAAGGGAAGAGACGCCTCACACCTCAGAAGAAAGGGTTCTCCCGGCTGGGGGCCCCACCCTCTGGACCACCGTGTCACCATGTCAAAGAAGGGTGCCGGCAGCCGAGCTAAGGGAGACAGACCCGACGCCTTAGCTGCTTTACAAGCTGCCAATGAAGAGCTCAGGGCCAAACTGACAGACATCCAAATCGAACTCCAGCAAGAAAAGAGTAAGGTGAGCAAGTTGGAGAGGGAGAAAACCCAGGAGGTGAAGCACGAGCAGCACAAGTCCACCGTGGTGGTAACGGAGCTGAAGACCAAGCTCCACGAGGAGAAGATGAAGGAGCTCCACGGCATCCGGGAGACCCTCCTCCGGCAGCACGAGTCCGAGCTGCTGCGCGTCATCAAGATCAAGGACAGCGAGATCCAGCGGCTGCAGGCGCTCGTCAACGCCCTGCGCGACGGCTCCACCGACAAGGTGAAGACCGCGCTGTTCGCCGAGGCCCGGGAGGAGGCCCGGCGGGGCTTCGACGCGGAGAAGTCCAGGATGCAGCAGGAGATCTCCGAGCTCAAGGGGGTCAGGCGGCAGATGGAGGAGGCGCTGAGCGTGGTGATCCAGGCGGACAAGATCAAAGCGGCCGAGATCAGGAGTGTGTATCACCTCCACCAGGAGGAGATCTCCCGAATCAAGAGGGAGTGCGAGCGGGAGATACGCCGGCTGATGGATGAGATTAAGGTAAAAGACAGAGCAGTCTACGTGCTGGAAAGAGAGCTCGGGCTCCAAGCTGGGCAAACTCAGAGACTCCAGCTCCAAAAAGAGGCTCTAGATGAGCAGCTTGTCCAGTTCAGGGAGGCTGAGCGACACCTGGGTAGCCCGAAACGAGAGGCTCCTTATGCAAGCGGTGCAGGAGACGCCTCTGATCATTCAGGAAGTCCTGAACAGCAGTTGGATGAAAAGGACGCTCGGCGCTTCCAGCTTAAGATTGCCGAGCTGAGTGCCATCATACGCAAACTGGAGGACCGCAATGCACTCCTGTCTGAGGAAAGGAACGAACTGCTCAAGCGCCTGCGGGAGGCAGAGAGTCAGTACAAGCCGCTGCTGGATAAAAACCGGCGTCTCAGCAGGAAGAACGAGGAGCTGCTGCACGCTTTCCGACGCATGGAGAACAAACTGAAATTCGTCACCCAGGAGAACATGGAAATGAGAGAGCGGGTGGGGACCATCAGACGCCCCAGCTCCCTGAACGACCTCGACCAAAGTCAAGAAGAGCGAGAGATTGAATTCCTGAGGCTTCAAGTCCTTGAGCAGCAAAATATCATTGACGATTTGTCCAAGGCCCTGGAAACGGCTGGATATGTCAAGAGTGTTATAGAGCGTGACAAGCTTCTGAGGTACCGGCGCCAAAGGAAGAAAATCGTGAAGCCATGTAAGAAGCCGGTGGTAGAGACATTCTTCGGGTACGATGAAGACGCGTCCATAGACTCTGACGGCTCCTCCATCTCCTATCAGACGGACCGGACGCCCTGCACCCCCGATGATGATTTGGAAGAGGGCATGGCCAAAGAGGAAACAGAACTGCGCTTTCGACAGCTGACGATGGAGTACCAAGCATTGCAACGGGCGTATGCACTATTACAAGAGCAGGTCGGAGGATCGTTTGATGCAGAAAGAGAAGTGAAGGATATGAAGTGGATTGAGGAGAAACAGGCCCTGTATCGGAGAAATCAGGAACTTGTGGATAAGATTAAGCAGATGGAGACGGAGGAATCGCGCCTGAAACGTGACATCCAGGACATCAAAGACCAGAATGAACTTCTAGAGTTCCGTATTCTAGAACTTGAAGACATCGTCATCACAGAACTGATGAAACAGCTGGATATTTTAGGAGATAACGCCAACTTAACCAATGAGGAGCAAGTGGTTGTCATACAAGCACGGACCATTTTGACCTTAGCAGAAAAGTGGCTCCAGCAGATAGAAGTCACCAAATCAGCTCTGCAGCAGAAAATGCTGGACCTGGAAAACGAAAAGGAGCTTTTTAGTAAACAGAAAGGGTATCTGGACGAGGAACTGGACTACAGGAAACAGTCGATGGATCAAGCACACAAGCGGATCCTGGAACTGGAGGCGATGCTCTTCGACGCCCTGCGGCAGGAGGCCGGCGCGAAGATGTCCGAGCTGCTGTCGGAGGAGGAGCGCGAGACGCTGAAGGGCGCCGTGGAGCAGTGGAAGCGCCAGGTGATGAGCGAGCTGCGGGAGCGAGACGCGCAGATCCTGAGGGAGCGGATGGAGCTGGTCCACCACGCACAACAGAGAATTAAAGAGCTGGAAGAAAGAATAGAAGCACAGAAACGACAGATAAAGGAATTGGAAGAAAAGccTTCATTCTTTGGTCTTAGCTCTTCCAGGCAGCCACAGCAGGGGTTCAGAAATGGTGTGACCCTGAAGATGGATGACTTAGTGCTGCTGCACATCCTGCCAGTGCGATGCTGAGGGACGCCGCGCTCCTGGGATCACAATCTGAGGTTCACCCCTGTGGGTGAAGGTCCCAGGACACTCCCACACCAGGGAGAAGACACCAGAAGAATATGATGACTTGTTTTCGAACCAGCTGAGTAAAACTGCCAGTTTCCCTACGGACTGAAATCTTATCAACCAGGGCCTCCATCAGATGTCATTATTACTGTAttgttgtagtgtgtgtgtgtgtcggtggcGGGCGGTCACAGTAAACTAGGCAAGCGGCGCTTGGccagaagcaattaaaatgacGAGAGAATGTAGCCTGCATAATATCAGTTTTATtggtattatattattcttatcaCCATCTTATCATCATTGTATTTCTCTTAAAGTTTTCCTCTGTcccctttattttctcttcagagAACAAGGACCTCCTCTCATTTTGTGATtccacactacacaacactgtgTACGTGACAGCTATGCTAGCTGTGTGTCTCCCAGTCAGTTTGTGTCACTGGTGTGCATCGGTGCCCGTCACGAACGCATGCTTTAGCTGTGCAGTCTACTTCTGCAAAACGCACCAAGACTGGATGATATTGTTAAGAGATGTTTCATAGCTTGTCCGGGTGCAATGTTAGCAATGTTACCTCTCGCCACTGGTATGTAtgggtgtatgtatgtatttgtgtatttgtttttggaatCATGTTAGTTTGTaggtttttttgcttttcaataatcgtttatttattcagtaaaacaaaatccatcTATAAATGCAGTGTACTGGTCAAATAACGTATTAAGCATTCTTCAGCCACAAATGTGTCTCCATCATCCTTAATGATGGCCGTAGTTCATTGATCGTTGAAAGGAACTCGCCACTGTGTGATATCTGAATGGACACTGTAACAAATGTAAGAAAGTCTTCTCACATGATTTCCATTCAGACTACTCTTCATTTGTTGTATTCATTGATACACTCTGTATTGGTTGCTTAATCGGTGTGTTCATCTCTTCTTTCTGTTCTGATATCATAAGCAGACCAATCCATCCCGGTATGAGCTCTGTTGTAACTAATGTCTATGTGTCTGCTGTTAAAATAAGTGGCTGTGGTTTGGATCGCCTTCGGATATTTGTGAACATTTACTCTAAGAAAGCTAACTGTTCAATAGAGTGATTGAATGTACTATGCAGGCACTTTTAAAACTGccttaattcaaattatttttatgaggACCTTAAGTCATTGGCCTGCttgaagaaaatgaataaacacaaacgGCTCTGCTGCGAATGGTGCGACATGTTTTTGCACGGACAGTTTATTTTGGTACAGCACATGatgcattttttgtataatCTGATGCGAAGGCGAGTAATTTTAAAGCTACCACATCTCATTTATTACTCAGGCCATGCCTTTGCatgttgtatatatgtatatcatggTCTCATTCAACAGTATTTTgcacaggaagaaaaaacaccaacaacaacaaaaatcttgGCTAccattataaagaaaatattgatcaaAGGAGAACATGTATAGAAACAAGGCATGTAATAAAGAATGGTGACTTGtaccaaaatataatatttatatgtacaaaAGAGATAtttgtatagaattgtataatgGCCAAATGTATTCCTTTATGTCATTCTCACCAAATCTTAGTCATATGGCGCTCAAAAACACttgcatatattttgaaacattattattttgttctgagGGTGAGTACAGGAAACGTACATTAGACTGAAGCAGAGTGACATTTGGGGTAGCAGTTAAAAGTCAGTGTCCTTTTACTGAATTAAGTTAATTACCAGAAAATGGCTCCCGTCGTTTTAAAGTGTCTTCTTGCATTGTGTAAACTGGGTATCATGCAATCAAGAGAACACATCTGAAAGTTGAGATGTTGTCTCTGTGGTCAAGCATCATAGCATCTCTCTGTTTTTGAGGAAAGGGAGGTTTAAGAAAAAATCAGTCCCCAGAGCAGAAAAAAGTGTATGTTACTGGAGTCTAGATACACAAACAAGAGAACATGTTATGAAGAAACGAGAACGAAAAGGGAAATAAAGCTTGAAACATGTTTCCCCAAAATCAGTGTTATcaaatgctgttttgtttgtatttcctttGTAATATGCAAGTATTTCTGAGTTTGTCTAAACTAAAATCCATTTGAACTTCAAACTCCAATAGCTGACAGCTGGTCTCTGTGTTATGATGTGTATTGCAAAGTGTAAACATATTGTTCAAGCTGTTAAAGGACAGTAGCTGTTATTTGAAGTATTATGAACAATAATGAAAGCCTTCACTAAACCCCTGAGTGCCTTACACAGCTtgataacaaatacattttaaccttCTTTCAACTTATGTATTTGGTGTAGTGCAAGATCTCTTACACATTCTGGCAACAACGAGCCAGGATTTAACGGCGCCGTGTCAGCACTTCAATGAATAGGTTACCTATAGACTTTATGGATTTAGTTTAGACTCAGGAAACCATAttgtgaatatttgtattaaatcatgattatttattgtatattttataaaaagggTCTATTGTAAATTTATGCAAGAATAAAAAAGGACAAAGACGTTTTAGCTTCTGTCTAAAATGGCCAAaactatgtaatttgtttatgtgATCTGCGTTATAATCTCACCACACTCATAtcctaaatatttaatgttgggTTAAGTGATAAACCAGTAATTGTCAACCCTTAAACCAGGACTATTTGTTGATCAGCTACAAAATTTtacacatatttttgtattgtgatCCATGTATATTAGATATTTCTattcatttgtaaaatgcatatattattgtaatttttttaataaaacgttattgtttta

Function

GO: NA

KEGG:

id description
K24785 JAKMIP3; janus kinase and microtubule-interacting protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174126 lncRNA downstream 137130 895012 ~ 898417 (-) False G138430
TU174128 lncRNA downstream 137130 895012 ~ 898417 (-) True G138430
TU174129 lncRNA downstream 137130 895012 ~ 898417 (-) False G138430
TU174099 lncRNA downstream 228489 805760 ~ 807058 (-) False AMCG00002743
TU174037 lncRNA downstream 230392 803573 ~ 805155 (-) True G138373
TU174258 lncRNA upstream 420168 1489562 ~ 1518053 (-) True G138535
TU174285 lncRNA upstream 863966 1933360 ~ 1933995 (-) True G138559
TU174334 lncRNA upstream 1014504 2083898 ~ 2084097 (-) True G138594
TU174435 lncRNA upstream 1432719 2502113 ~ 2502314 (-) True G138678
TU174481 lncRNA upstream 1622036 2691430 ~ 2691869 (-) True G138720
AMCG00002756 mRNA downstream 948 1033446 ~ 1034599 (-) True AMCG00002756
AMCG00002754 mRNA downstream 3683 1020313 ~ 1031864 (-) True AMCG00002754
AMCG00002749 mRNA downstream 83851 944861 ~ 951696 (-) True AMCG00002749
AMCG00002752 mRNA downstream 111875 920788 ~ 923672 (-) False AMCG00002752
AMCG00002751 mRNA downstream 116072 910725 ~ 919475 (-) True AMCG00002751
AMCG00002758 mRNA upstream 25601 1094995 ~ 1103898 (-) True AMCG00002758
AMCG00002764 mRNA upstream 325617 1395011 ~ 1410128 (-) True AMCG00002764
AMCG00002767 mRNA upstream 471792 1541186 ~ 1551984 (-) True AMCG00002767
AMCG00002769 mRNA upstream 849646 1919040 ~ 1944943 (-) True AMCG00002769
AMCG00002768 mRNA upstream 880989 1950383 ~ 1968438 (-) True AMCG00002768
TU174137 other downstream 110149 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 111313 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 111313 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 213956 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 224542 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 1648814 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 2868370 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 2932256 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 5993079 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 6279417 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010585 True 1887 mRNA 0.48 20 NC_007123.7 41633674 ~ 41684729 (-)