RNA id: TU174126


Basic Information

Item Value
RNA id TU174126
length 2359
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G138430
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 895012 ~ 898417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAATTACATCTcttttatacatatttcataaatGATAcaggattttacatttttttattttttatatctcaTAACTTTACTGCATCCAATTCCAACTCAATACCAGATAAATCAAGAGAAaaccagaaaagaaacaaatcaactaaggaaaaaactaaaacgaaAAGATGAGGCTTCCCGTTTCTGCCTGCGTCGCTCCTGGTGCTGTAAAAGCTCGAGTTCTGAGAGGTCTGCTCGGACTCTGAGCGCCCACAGGCCAGGACGGGTCGCCCCTGCAGGAGGACAGAAGGAAAGCAGGGCAGCTGGTGCACAACAGCAGCCCCCGTGCTGTGCGGGGGAGCGTCTGCTCTGTCCGTGAGGAAACGGACCAGGAGACTCTGCCCGGCCCCAGGGAGGACAGTCTGTAGATGAAGACGCGGGGCAGCTCCCTGTCTGCCGGCTCTCTAGCGCAGGGCTGAGATCCACACAGTGCCGGAGCCGGGCCGCGCTCAGTGCCCCCTCGCTCACTGCTGGGTTCTGCCCGGTTCAGACTGGCTCAGTTACTCGTTTCTATCCAAAAACTCAACTTACTGAACGGAGTGGTTCTGCTCGAAGCCCGGTGGGGGCCCGTGAAGCAGCGGGACGGAGCACCACATGGACACGGCACCTCCCAGCGCCTAGCGTGGGGTCTTCCGGGTTTCACTCACTTGATCAAATCACTGACTGAAGTGGTAAACTGGGCCCATGGGCCCCAGAGCTCTCCAGGTCTCTACCCTGGTGGCCTGCGGTACCGGTTTCCCATCACCAGGTggtgttgttgttctttttggtttctccaaacaaaaacaaaacaaaacgaagGAAATCGCAAGGCATAAGAAAAGCAGTGCCACTCATTTGGACGGTAATAGATTGCACCTCAGATTCATAtaatagttttccttttttatagaAGACAAATTTATAATAATTCTATATTATACAgaccaaaagaaaagaaaagaaaagaaagtctAGTTTTCCCGACGCCAGCCTCCCCCCCAGGCACAGAGCTGGCACGACAGCCAGTAAATCAGCACATTCCTGTAATCTGCATGCTGTGTAAcaaacccccccgccccccagaCAGCAGGCACTGTAGAAACAGAGCTGTCAGGATCACAGTGGACCCCCGAGCAAACGCCCCCCACtggtgaaagaaacaaacaaagaccaTGTCTCAGTGAAGATGTTCAGCCCCCGCCCTGCACAGTGAGAGCATCCCTCTCTGTTGCCAAGAAGCCTGTCCGCCCCCGCAGGGACGAGAGAGAGGTACAGTCCAGAGCCCACCCCCTCTCAACAGACAGTAGGATAGTCCACAGACCACCCtaccaattaatcaatcaatctgcAGCACCCAGAGCTCACCAGCTACGACAGGGAGACACACAgaccgagagagcgagagcaagacagaaagagagagacagagagagaacgagagagacagagacagagagagaacgagagagacagagacagagagacagagagagaacgagagagacacagaccgagacagagagagagagagagacagacagacacacagagagccGCAGAGTCTCATATAACCACAGGCCTGATCGGAGAAGGGAGGGTgggattttctctctctctgtccgtcctGTGTTTTGACCCTCGTTGCTCTTTTTGGGATACTCATCCTCACCGAAGGAGCAGCCGAACCCAAGCCCCGACCccagcgcagcgcagcgcacGGCTCGTCCCTGCCCGTGCCGCTCAGTGAGGCGCTGTGGGGTCTGCAGGTGTTTGTTTCCATCAGACACAGTGAGGTGAAAAGTCCAAAGAATTAAAGCATTGAAGAGAGATCATGAAATAAGAGACACAAAGGCAATTTGTGCTTCAGCAGCATCCCTgaaatcaaagcaaacaaacaaaaagcgaGAGGCTGAGCGCTGGCCTGCCCCCCGCCCCGCGGTGTCCAACACAcacatccaccccccccccccccccccccctggcGCTGGACAGGGTGGTCCGGTCCAGTTGTGCGGGGCTGGTGGGGGCTGAGGGCGTCTGCACAGTAGGTGCTGTAGAGTCGAGGCCCCTGCAACTGGATATGGCTTTACACAAAACGGCAGAGGCCAGGTGTGGACAGTCCACAGTGCCCCCCCAAGCCCCCACCGGCAGGACTGGGACCCTGGTTTCATTACAGCGGGGGGGACAGAGCAGCCGGGGGGGGAAGAGACAGCAGGGTGTTGGGGGGGGCAGCCTGTGGGACACACCGGTGGACTGGCtagacaggagaggagaggagggacaCGGATGCACTTCCTTAGTGGGGAGGGGTCATtgtgtcagccagtcagtgccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174099 lncRNA downstream 87954 805760 ~ 807058 (-) False AMCG00002743
TU174037 lncRNA downstream 89857 803573 ~ 805155 (-) True G138373
TU174034 lncRNA downstream 93245 801214 ~ 801767 (-) True G138371
TU174012 lncRNA downstream 146543 747494 ~ 748469 (-) True G138352
TU173983 lncRNA downstream 411409 483224 ~ 483603 (-) True G138324
TU174258 lncRNA upstream 591145 1489562 ~ 1518053 (-) True G138535
TU174285 lncRNA upstream 1034943 1933360 ~ 1933995 (-) True G138559
TU174334 lncRNA upstream 1185481 2083898 ~ 2084097 (-) True G138594
TU174435 lncRNA upstream 1603696 2502113 ~ 2502314 (-) True G138678
TU174481 lncRNA upstream 1793013 2691430 ~ 2691869 (-) True G138720
AMCG00002744 mRNA downstream 41282 846563 ~ 853730 (-) True AMCG00002744
AMCG00002745 mRNA downstream 51292 841258 ~ 843720 (-) True AMCG00002745
AMCG00002742 mRNA downstream 65843 828807 ~ 829169 (-) True AMCG00002742
AMCG00002743 mRNA downstream 78251 806818 ~ 816761 (-) True AMCG00002743
AMCG00002738 mRNA downstream 126189 763129 ~ 768823 (-) True AMCG00002738
AMCG00002750 mRNA upstream 6038 904455 ~ 907446 (-) True AMCG00002750
AMCG00002751 mRNA upstream 12308 910725 ~ 919475 (-) True AMCG00002751
AMCG00002752 mRNA upstream 22371 920788 ~ 923672 (-) False AMCG00002752
AMCG00002749 mRNA upstream 46444 944861 ~ 951696 (-) True AMCG00002749
AMCG00002754 mRNA upstream 121896 1020313 ~ 1031864 (-) True AMCG00002754
TU174097 other downstream 73421 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 84007 808155 ~ 811005 (-) False AMCG00002743
TU173921 other downstream 705754 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 748172 144926 ~ 146840 (-) True G138245
TU174135 other upstream 24593 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 24593 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 24593 923010 ~ 925398 (-) False AMCG00002752
TU174506 other upstream 1819791 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 3039347 3937764 ~ 3950168 (-) False AMCG00002828

Expression Profile