RNA id: AMCG00002738


Basic Information

Item Value
RNA id AMCG00002738
length 1512
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00002738
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 763129 ~ 768823 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCACAAAGGTCGCCTGAGAGCGGGAGGAGTACACCCTGCTGTTGATGGTCGACCCTGCCGTTGCTATTCTCTGTGCCAGCGCCACCCTCCGGGGGCTGCCGAAGCACCAAAATGCGCGTTTTCTGTGGCCTGTGGAATTGACAACCAGCCCCGAGCCTCTCTGAGTCCCAGTCGCCACTCTCTCCCCAGCCTGCTGTCACATCACCTCACTGCACCGCTGTACCCTCCCCCACACAGGAAGCTAGaTGGCCTGTGCTACTTCACCATTTCAGCGCCCTACAAGACGTATGCCTGCCCTGAAGGAGCCGACGTCACCATGCAGTGCGTCGTCGAGGGACACCTGACTCACCCGCAAGACCACCTGCAGAAGGCGTGGCTGTACAACCAGCACTCGAAGCAGCACTGCCGTTTGATCCACCCTCGCCAACTGCCCAGCCACAACCACACTCACGCCTACAACCCCAGTGCATTGGGTCTGCACTACAGAATGAACGCGGGCACTCTCTATATGACACTGAGCAACCTGACCGCCGCCGACTCCGGCCGCTACTGCTGCCTGGTGCTGGAAGTGGAGGGCAAGATTCGGCAGCATCATGTGGTGGAGGAGAGGGTGCACGACTACATCCTGCTCACCGTGTCTCCCAGTAAGTCCCCCCAACTGGCACTGATACTGCTGCTGTGCCCCCCCCACTACACTGGGGTTTGTAATgctgtccctccctctgtgtCATCTCTCCCCCGCACCTCACTCTTAGACTCTCTCTCCGTGTTTTCACCCGCAGGCTCTACAGCAGCAGGGTTGGCCACAGCAGGGTGCATTATGGGAATCCTGTCGCTGCCGCTGATCCTCCTGCTGGTGTACAAGCAGAGACAGACTGCCACCTCCAACCGCCgggCTCACGAGCTGGTGCGCATGGACAGTGAGGCGCAGGGCCATGAGAACCCCGTTTTCCTAGGGGAGTCTCCCAAGATGCGCACCGTGTCTCAGATCATGCGGCAGCAGTCTGAGACGGGGCGCCACCTGCTGTCCGAGCCGGGCACCCCACTGTCGCCGCCCACCCACGGAGACGTCTTCTTCCCCTCGCAAGCCTGCGCCTGCTACTACACTGCAGCGCCACTGCTACAGCACACAGCTGTAGACTCACTGCACCGCACTGGGAGTCTGCCACACAGCCGCTCGGCACAGCCCAACACCTGCAGCAACATTCCCAGCATTCCTGGCCATTTCCTGTGCAGCCCGGGCGGGGGGGTGGCCGTCTGCCAGGAAAACGAGGATTTCACAGATAAGAGGATGAGATGCGCAGAAGCCCGTCCTGCCACAGCGACTCGGCGTGACTCAGGATTAATATTTCGGGGTCTGCGTGCCGAGAGGCCAGACATGGCTCTGCTCAGTGCCCTGATTGACTGCACTCACACGCATTCCTCTGGCCTTAGTCACGCCAAGAAGCGGCCGCGTCCCGACGGAAGCGAGAGAGAAAATAAGTTCACGGCTGCCTGGGGTATATAG

Function

GO: NA

KEGG:

id description
K23268 VSIR, VISTA; V-type immunoglobulin domain-containing suppressor of T-cell activation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174012 lncRNA downstream 14660 747494 ~ 748469 (-) True G138352
TU173983 lncRNA downstream 279526 483224 ~ 483603 (-) True G138324
TU173969 lncRNA downstream 391505 366207 ~ 371624 (-) True G138310
TU173961 lncRNA downstream 420611 335737 ~ 342518 (-) True G138304
TU173957 lncRNA downstream 457269 303398 ~ 305860 (-) False G138303
TU174034 lncRNA upstream 32391 801214 ~ 801767 (-) True G138371
TU174037 lncRNA upstream 34750 803573 ~ 805155 (-) True G138373
TU174099 lncRNA upstream 36937 805760 ~ 807058 (-) False AMCG00002743
TU174126 lncRNA upstream 126189 895012 ~ 898417 (-) False G138430
TU174128 lncRNA upstream 126189 895012 ~ 898417 (-) True G138430
AMCG00002737 mRNA downstream 12099 750635 ~ 751030 (-) True AMCG00002737
AMCG00002733 mRNA downstream 183165 564660 ~ 579964 (-) True AMCG00002733
AMCG00002732 mRNA downstream 249742 485836 ~ 513387 (-) True AMCG00002732
AMCG00002734 mRNA downstream 278829 483902 ~ 484300 (-) True AMCG00002734
AMCG00002731 mRNA downstream 470654 280814 ~ 292475 (-) True AMCG00002731
AMCG00002743 mRNA upstream 37995 806818 ~ 816761 (-) True AMCG00002743
AMCG00002742 mRNA upstream 59984 828807 ~ 829169 (-) True AMCG00002742
AMCG00002745 mRNA upstream 72435 841258 ~ 843720 (-) True AMCG00002745
AMCG00002744 mRNA upstream 77740 846563 ~ 853730 (-) True AMCG00002744
AMCG00002750 mRNA upstream 135632 904455 ~ 907446 (-) True AMCG00002750
TU173921 other downstream 573871 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 616289 144926 ~ 146840 (-) True G138245
TU174098 other upstream 39332 808155 ~ 811005 (-) False AMCG00002743
TU174097 other upstream 43922 812745 ~ 821591 (-) False AMCG00002743
TU174135 other upstream 154187 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 154187 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 154187 923010 ~ 925398 (-) False AMCG00002752

Expression Profile