RNA id: TU174012


Basic Information

Item Value
RNA id TU174012
length 976
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G138352
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 747494 ~ 748469 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctccctctgctctgtctccccctccacccttgcttccactgccctcactctcttaccttccattgactgtttttcccatctatctgtcaactgtgctacctcctctttgttctcctccctcacctcctctctgtcctctcacgtctcgtcctgagGACAGCTGAagctcctacacccagcacatcaccacactgacgcgcacctgcagatacttcctgagcaacatacgccggatccgtcccttcctcaccgactactcgactcagctgctcatccagtccctggtcctctccctcctggccggcctgcaactactacccgcggCTCCacctcatccagaactctgcggctcgtctggtgtctctctgccctgattcgcacacgctactccactgctccgctccctccactggctcccgatagcggcacgcattcagttcaagacattgaccctcacctaccgctgtctcgaccacacggcaccaagctaccttcagtcactcgtctctccatacatcccctccagaccactgcgctcctccagtgccagaagactaactctgcctcctctgcactctccttcctccagagctgctccttctcatccctggaccctaagtggtggaacgaccttcccaacaaagtcaaaacagcagagtccctgacctccttccggcgcttactcaagacacatcttttcagacagtactattagtccttttaattcctgttagatagcacttcacagcattttatcatgcttcttgcgttactaatacttgtattattgattgatttccgccttgctccctttcccgtagcccttgaatgtgacctaacatcttgacagcacttagcttttactttccaggatgtatgacctcactcattgtattcacttgtgtaaattggaagtggttaaatgtattatatcttgaattgctttgtataatataaatctgaatttgtaatgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173983 lncRNA downstream 263891 483224 ~ 483603 (-) True G138324
TU173959 lncRNA downstream 360419 302082 ~ 387075 (-) True G138303
TU173960 lncRNA downstream 361890 302082 ~ 385604 (-) False G138303
TU173969 lncRNA downstream 375870 366207 ~ 371624 (-) True G138310
TU173961 lncRNA downstream 404976 335737 ~ 342518 (-) True G138304
TU174034 lncRNA upstream 52745 801214 ~ 801767 (-) True G138371
TU174037 lncRNA upstream 55104 803573 ~ 805155 (-) True G138373
TU174099 lncRNA upstream 57291 805760 ~ 807058 (-) False AMCG00002743
TU174126 lncRNA upstream 146543 895012 ~ 898417 (-) False G138430
TU174128 lncRNA upstream 146543 895012 ~ 898417 (-) True G138430
AMCG00002733 mRNA downstream 167530 564660 ~ 579964 (-) True AMCG00002733
AMCG00002732 mRNA downstream 234107 485836 ~ 513387 (-) True AMCG00002732
AMCG00002734 mRNA downstream 263194 483902 ~ 484300 (-) True AMCG00002734
AMCG00002731 mRNA downstream 455019 280814 ~ 292475 (-) True AMCG00002731
AMCG00002727 mRNA downstream 486321 254949 ~ 261173 (-) True AMCG00002727
AMCG00002737 mRNA upstream 2166 750635 ~ 751030 (-) True AMCG00002737
AMCG00002738 mRNA upstream 14660 763129 ~ 768823 (-) True AMCG00002738
AMCG00002743 mRNA upstream 58349 806818 ~ 816761 (-) True AMCG00002743
AMCG00002742 mRNA upstream 80338 828807 ~ 829169 (-) True AMCG00002742
AMCG00002745 mRNA upstream 92789 841258 ~ 843720 (-) True AMCG00002745
TU173921 other downstream 558236 184121 ~ 189258 (-) True AMCG00002725
TU173884 other downstream 600654 144926 ~ 146840 (-) True G138245
TU174098 other upstream 59686 808155 ~ 811005 (-) False AMCG00002743
TU174097 other upstream 64276 812745 ~ 821591 (-) False AMCG00002743
TU174135 other upstream 174541 923010 ~ 924234 (-) True AMCG00002752
TU174136 other upstream 174541 923010 ~ 924234 (-) False AMCG00002752
TU174137 other upstream 174541 923010 ~ 925398 (-) False AMCG00002752

Expression Profile