Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00002751 |
| length | 1116 |
| RNA type | mRNA |
| GC content | 0.65 |
| exon number | 10 |
| gene id | AMCG00002751 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030139.1 |
| NCBI id | CM030139.1 |
| chromosome length | 23121578 |
| location | 910725 ~ 919475 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0004656 | procollagen-proline 4-dioxygenase activity | molecular_function |
| GO:0031418 | L-ascorbic acid binding | molecular_function |
| id | description |
|---|---|
| K00472 | P4HA; prolyl 4-hydroxylase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU174126 | lncRNA | downstream | 12308 | 895012 ~ 898417 (-) | False | G138430 |
| TU174128 | lncRNA | downstream | 12308 | 895012 ~ 898417 (-) | True | G138430 |
| TU174129 | lncRNA | downstream | 12308 | 895012 ~ 898417 (-) | False | G138430 |
| TU174099 | lncRNA | downstream | 103667 | 805760 ~ 807058 (-) | False | AMCG00002743 |
| TU174037 | lncRNA | downstream | 105570 | 803573 ~ 805155 (-) | True | G138373 |
| TU174258 | lncRNA | upstream | 570087 | 1489562 ~ 1518053 (-) | True | G138535 |
| TU174285 | lncRNA | upstream | 1013885 | 1933360 ~ 1933995 (-) | True | G138559 |
| TU174334 | lncRNA | upstream | 1164423 | 2083898 ~ 2084097 (-) | True | G138594 |
| TU174435 | lncRNA | upstream | 1582638 | 2502113 ~ 2502314 (-) | True | G138678 |
| TU174481 | lncRNA | upstream | 1771955 | 2691430 ~ 2691869 (-) | True | G138720 |
| AMCG00002750 | mRNA | downstream | 3279 | 904455 ~ 907446 (-) | True | AMCG00002750 |
| AMCG00002744 | mRNA | downstream | 56995 | 846563 ~ 853730 (-) | True | AMCG00002744 |
| AMCG00002745 | mRNA | downstream | 67005 | 841258 ~ 843720 (-) | True | AMCG00002745 |
| AMCG00002742 | mRNA | downstream | 81556 | 828807 ~ 829169 (-) | True | AMCG00002742 |
| AMCG00002743 | mRNA | downstream | 93964 | 806818 ~ 816761 (-) | True | AMCG00002743 |
| AMCG00002752 | mRNA | upstream | 1313 | 920788 ~ 923672 (-) | False | AMCG00002752 |
| AMCG00002749 | mRNA | upstream | 25386 | 944861 ~ 951696 (-) | True | AMCG00002749 |
| AMCG00002754 | mRNA | upstream | 100838 | 1020313 ~ 1031864 (-) | True | AMCG00002754 |
| AMCG00002756 | mRNA | upstream | 113971 | 1033446 ~ 1034599 (-) | True | AMCG00002756 |
| AMCG00002755 | mRNA | upstream | 116072 | 1035547 ~ 1069394 (-) | True | AMCG00002755 |
| TU174097 | other | downstream | 89134 | 812745 ~ 821591 (-) | False | AMCG00002743 |
| TU174098 | other | downstream | 99720 | 808155 ~ 811005 (-) | False | AMCG00002743 |
| TU173921 | other | downstream | 721467 | 184121 ~ 189258 (-) | True | AMCG00002725 |
| TU173884 | other | downstream | 763885 | 144926 ~ 146840 (-) | True | G138245 |
| TU174135 | other | upstream | 3535 | 923010 ~ 924234 (-) | True | AMCG00002752 |
| TU174136 | other | upstream | 3535 | 923010 ~ 924234 (-) | False | AMCG00002752 |
| TU174137 | other | upstream | 3535 | 923010 ~ 925398 (-) | False | AMCG00002752 |
| TU174506 | other | upstream | 1798733 | 2718208 ~ 2719419 (-) | True | G138741 |
| TU174734 | other | upstream | 3018289 | 3937764 ~ 3950168 (-) | False | AMCG00002828 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00009042 | False | 2239 | mRNA | 0.47 | 15 | NC_007123.7 | 9542124 ~ 9585670 (+) |
