AMCG00002856


Basic Information

Item Value
gene id AMCG00002856
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4750605 ~ 4754918 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002856
ATGGAACCAGGTCAAAATATGCCAGATGACCCACCAGAAAGCAGTGAAAATGGGAAGCCTACAGAGCAGGAATCAGAGGCATCACGACTGCAGCCCTCAGCGTTTCCTACTCCAGCGCAGAGCTTGGAGCTTGGGTTGAAAGACTTTAAGGTTATGCTTCCGGTGATGCCTAACCTTCAGCAGTACGCTCTACAGAAAACAGGGACGATACCTGCAGAACCCAAAGTGCAGACCGCTAGAAAGTCTTTCAAGAGGAAGCCCATCAAAGGCCAGGACACCGAAGGCCCCAGTCCGCACCCACGACTCAACCTGAATCCACGAGAGGGAGTTAAGGTTTCAGGGAAAATACTCAGGTTCAGCTGCTCTGAATGCAAGGGCGATACTGCGTTCAGCCCCAATGACTTGATGAAGCATTTTCAGGTGGCTCACCAAGGATTCCTGCCCACATACCCGTGTGACATGTGCAATTTTACAGCCAACGATTTCTCCCTCCTCCAGCAGCATCGACTGAGGCACCGGGATACATTTGTTAAGTGTGAAATCTGTAATGACAGCATACAGTACACTCTCCTTCAGCTGACTAGACACTTCGGCTTATATCACAGCCTCAATGGCAACTACCGCTGTGAGAAGTGCAAGTTCTGCACAAAAGACGTGGGCACATTCGTGCAGCACATACACCGGCACGGTGAAGTGCAGTACAAATGTGGCAAATGCCCGCATGTGAGTTTCACCAAAGGAGAGTTTCAGAGGCACCTCGTCATGCACACGGGCAGCTTTCCCTTCATTTGTCAATTCTGCGACTACGGGGCGACGCGGAAGGATTATATTATTAAGCATATGAGCGCGATGCACAGTGATGAGATTGAAAGGAAATGCAAGTGGAAGGAAAAAGACGATGGTGCTAAAACTTTAGTAGACATGTCCCCAGGTTTAAAGCTTTTGTTGAAGAAGAATGTAGCAGGGGTTCCAAGGGATGCACATTGGAGGACCAAAGGACTACATGCTCTGAGTGGAGGAGGTCTGCTGGACGAGTATGGAAGGCTGTCAAATCCAGAAAAAACTTTGGAAGAGACTCAGCAATTCTTAGAGAGATCTGTAGTGTCTGAAAAAGACTCTGCTCAATGGGCAAAGGTGAGAAAAAATGAACAGCAATATATTTCACCGATTTTGCCTGCTGTATTGCATCCCATGTTGGAAAGTGGATTTAATTCCAATACAGGTTTAATAAAAACTGGCAGCAATGGATCGCCTATGCtaatggttaaaaacaaaatttctATTCCTCCCAATTGCACTACCAAATTCATGGGGTTCAAGATGGTGGATGGCAAGAAACATTTAGTTCTCAAGGTCATACCAGCGGCTAAACTAGGTACTCCACAAAACGTGCCGTCAACTGTTGGAAAAGATACAAATGGACATTTGCCAGAAATACACCCTGAAGACATCAATGGTGCAAACTCTGATGTAGCATCACAATCCAGTAGCCAATCAGAACCCTCAAACTGTGCCGAGTCCGGACAAAGTACATTACCAGGCGGTTCGGACCTCCATCAGTCAGGTGCTGAAAGTCCTGCTGTCAAACAGTCTGATGAGGCAGAGGACCTGCCAAGCCATGCAACGCCACACACTGCCGATGAGGAGGTAGAGTCTGCAGTGCGGCAGATGAACGATGACGACGAAATCCCCGGTGTGAGCGTTTCCCCAGCCTCGAGCAAAGTCTTCCACTCTTCAGACCAGACGATGCATAGAGCGCCCTCCCCCTGTGAGGAGACGGGTCAGCCGAAGGAGCAGACAGTCTCACCCGATGGAACGAGCCTGGATACCGAGAAAGTGACTTTAACATCGGAAGAGACTGAGCTGCTTCGAGGCGAACCGGCAGATCCTGTAAAGGAGAGTGACGATCGCCTGATTCTAAATTCTTCTAGAGAAGAGGTATTTAGCTTTCATAATTACTCCAAAGATAGAACTTCTGATCAGTCCTCTGACTCACTCCCTTCTTGTGAGGGTGGGGAGTTGTGTGATACACATAATAGTGAGAGCGTTCAGGGTGTGGAAGATTTGCCATCTGGAAATGTGACTCCAGTGGAACAGCTTCCACCCGAGTCGCAGGAACGCCGAACGGAAGACGAAACGGGTGATGCGACTACTGATCAGCTCTCCGGTCACTCGGATCAATCTGCGATGGAGAAAGTACCAGATAGTGAAATCGAAGTTGACGAATGTGTGGCCGCTGTTGAAGAGGATGCCATCTGGCCCCCCGAGGCGATGGACGAGAACGCCGATTCCACGGAAATGCCAAAAATCACATCGGTGTTTTCGTTGCAGAGTCCAAAAAATAGTCCCAAGCTTGGGGTCAGTCAGCTTCCTGACAACGGGCTGGAAATGGGAAGTAAGGCGTCCCCCGTCTCTGAAGCACCAGCCTGCCCTAAAAACACAGAGGAAGTAAATCAGCCTGCTGGAGAGATTGGAAGCCCATGCAGGGCCGCGGCTCTGGGACGAATCCTGGAAGAGCATTCAGATGCAATTATCAGTCATCAGCTGGAAAAGGAGCGGTTTGGCACGGCTAATCAAGACCCGGCTAAGCACACTGCCACTCTGCGCATCATTCAACCGGTCGGTCTGACAGAGGGTAAGAAGCCAGTTTTTCTTAAGCCTTCTCAAAATGGATTCGCAGTACCCTTTCAGGTTGGAGGCAGTCAAGGATTTAAGTTGATTACAGGGTCCTCCATTCCCCAAATAAACGTGTCTTACCTGAAATCTGGAAATGAAAGACCAAAAAAAGCCCCAGGACTTGCCTTTACGCTAAATAATGGCAGAATGGGCACAGTTTCACAGATTGTAGGTGATAAAAAGGTAAGTGATGGGGCAGCAAATACAGAAGTAACGGTGCCGATAAGCTCTCCCGAGAGACCTGCCGTTTTGCAAGCTGGGCGACAAGCTTTCTTACTTAAGTGTATTTCCCCAGTCAAATCGGGGATATTGCTAAACAGTCAAACAGAAGGTAACATTGTGAATCAGAGTTTCCAAGCGAGTGACAGTGGAAGCAATACAGTTTTACTAAAGATTGTTAGAAATTCTTCCGATAGCAGTGTTGGGTGCGGCAGTGGCGAACTGAACGGAATAGCAGCACTAACTGCGACAAACCAGCCTATATATCTCACTACTGGTGCTTTGCAGTCACCTTGTATTTTGATGTCATCCAACCAATCGATTTTGAATGTCTCCACAGGCGGTAAAACACCGGGCCCATCACAAGACTGCTCCATCAATTCCCTCCGGGTTTCACAGGTGTTGAAGCACACCTCTCCAACTTCTGTGCAGGGCAAAGCACAAGAATGGGAAGCTGGGCGAGGAGTAAGTAATACGGACAAAAGCAAGCCAGCGTCTCCGGCGAGAGCAGGACAGGATCTGGCCGTGATCAAGAGGAAAAGGCAGAGAAAGCGCTCGCAAGGAGACTCTTCGGATTCGCCATCGAAAGCCAAGAGGCCGCCGAGCAAGAAGGcgaaagaaaagcagaaaggtGAAGCTGAAACTCCCGAGTCGTTTAGGGGAGTAGAGCCGAAGGATGTTGAGAGGACGCTGAGGCTTTCTCCTTTCAGTCGTGCACAGCTTATCAAATGCCCAAGAAGAAACCAGCCCGTGGTCGTGCTGAACCACCCAGACGCCGACCTGCCCGAGGTGGCCAACGTCATGAAAACCATTAACAAATTCAAAGGGCACGTGCTCAAAGTAGCCTTATCCCAGAGAACGGTCGATGCCCTCTCCGAGTCCGATGCCGGCCCCTGTAAGACGACGCCGGCCGCGATTTCTCACGCCTCTCGTAAGCGGAGATTGAAGCCGCCGAGTCCCGTCAAAGAGCGGTACATACTGAAGCTGAGGTTGAAGAAGATGAGCAGGAATAAGTATAAGGTGGTGAACTCCACCTCGGACCGCACGGAGAGATCGAGCTTCAGCTGCTGGTTCTGCGGCCGGATATTTGATAACCAGGAGGAGTGGATAGGGCACGGCCAGCGACATCTGATGGAGGCTACGAGAGACTgggatacattattttaa

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002856 True 4062 mRNA 0.50 2 4750605 4754918

Neighbor

gene id symbol gene type direction distance location
AMCG00002855 NA coding downstream 337 4746747 ~ 4750268 (-)
AMCG00002854 NA coding downstream 36299 4678707 ~ 4714306 (-)
AMCG00002851 NA coding downstream 149972 4582582 ~ 4600633 (-)
AMCG00002843 NA coding downstream 413679 4306326 ~ 4336926 (-)
AMCG00002844 NA coding downstream 452269 4282762 ~ 4298336 (-)
AMCG00002859 cpeb3,LOC106604870 coding upstream 43669 4798587 ~ 4826031 (-)
AMCG00002860 NA coding upstream 82802 4837720 ~ 4847720 (-)
AMCG00002865 ide coding upstream 124359 4879277 ~ 4906202 (-)
AMCG00002869 NA coding upstream 299214 5054132 ~ 5060548 (-)
AMCG00002870 reep3 coding upstream 313527 5068445 ~ 5090402 (-)
G139039 NA non-coding downstream 166433 4583865 ~ 4584172 (-)
G139029 NA non-coding downstream 239298 4507504 ~ 4511307 (-)
G139028 NA non-coding downstream 254243 4496162 ~ 4496362 (-)
G139027 LOC106576780,LOC103360772 non-coding downstream 255187 4495028 ~ 4495418 (-)
G139026 NA non-coding downstream 273942 4476464 ~ 4476663 (-)
G139249 NA non-coding upstream 641421 5396339 ~ 5396559 (-)
G139496 NA non-coding upstream 1402825 6157743 ~ 6158763 (-)
G139593 LOC100846954,LOC107575789 non-coding upstream 1727349 6482267 ~ 6510125 (-)
G139639 NA non-coding upstream 2246747 7001665 ~ 7073536 (-)
G139668 NA non-coding upstream 2463951 7218869 ~ 7219192 (-)
G138932 NA other downstream 747801 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 797281 3928761 ~ 3953324 (-)
G138741 NA other downstream 2031186 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 3825207 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 3929014 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 2307555 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 2593893 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 3176248 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 3730443 8485361 ~ 8494596 (-)
G140006 NA other upstream 4092114 8847032 ~ 8847840 (-)

Expression


Co-expression Network