RNA id: AMCG00002856


Basic Information

Item Value
RNA id AMCG00002856
length 4062
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00002856
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4750605 ~ 4754918 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAACCAGGTCAAAATATGCCAGATGACCCACCAGAAAGCAGTGAAAATGGGAAGCCTACAGAGCAGGAATCAGAGGCATCACGACTGCAGCCCTCAGCGTTTCCTACTCCAGCGCAGAGCTTGGAGCTTGGGTTGAAAGACTTTAAGGTTATGCTTCCGGTGATGCCTAACCTTCAGCAGTACGCTCTACAGAAAACAGGGACGATACCTGCAGAACCCAAAGTGCAGACCGCTAGAAAGTCTTTCAAGAGGAAGCCCATCAAAGGCCAGGACACCGAAGGCCCCAGTCCGCACCCACGACTCAACCTGAATCCACGAGAGGGAGTTAAGGTTTCAGGGAAAATACTCAGGTTCAGCTGCTCTGAATGCAAGGGCGATACTGCGTTCAGCCCCAATGACTTGATGAAGCATTTTCAGGTGGCTCACCAAGGATTCCTGCCCACATACCCGTGTGACATGTGCAATTTTACAGCCAACGATTTCTCCCTCCTCCAGCAGCATCGACTGAGGCACCGGGATACATTTGTTAAGTGTGAAATCTGTAATGACAGCATACAGTACACTCTCCTTCAGCTGACTAGACACTTCGGCTTATATCACAGCCTCAATGGCAACTACCGCTGTGAGAAGTGCAAGTTCTGCACAAAAGACGTGGGCACATTCGTGCAGCACATACACCGGCACGGTGAAGTGCAGTACAAATGTGGCAAATGCCCGCATGTGAGTTTCACCAAAGGAGAGTTTCAGAGGCACCTCGTCATGCACACGGGCAGCTTTCCCTTCATTTGTCAATTCTGCGACTACGGGGCGACGCGGAAGGATTATATTATTAAGCATATGAGCGCGATGCACAGTGATGAGATTGAAAGGAAATGCAAGTGGAAGGAAAAAGACGATGGTGCTAAAACTTTAGTAGACATGTCCCCAGGTTTAAAGCTTTTGTTGAAGAAGAATGTAGCAGGGGTTCCAAGGGATGCACATTGGAGGACCAAAGGACTACATGCTCTGAGTGGAGGAGGTCTGCTGGACGAGTATGGAAGGCTGTCAAATCCAGAAAAAACTTTGGAAGAGACTCAGCAATTCTTAGAGAGATCTGTAGTGTCTGAAAAAGACTCTGCTCAATGGGCAAAGGTGAGAAAAAATGAACAGCAATATATTTCACCGATTTTGCCTGCTGTATTGCATCCCATGTTGGAAAGTGGATTTAATTCCAATACAGGTTTAATAAAAACTGGCAGCAATGGATCGCCTATGCtaatggttaaaaacaaaatttctATTCCTCCCAATTGCACTACCAAATTCATGGGGTTCAAGATGGTGGATGGCAAGAAACATTTAGTTCTCAAGGTCATACCAGCGGCTAAACTAGGTACTCCACAAAACGTGCCGTCAACTGTTGGAAAAGATACAAATGGACATTTGCCAGAAATACACCCTGAAGACATCAATGGTGCAAACTCTGATGTAGCATCACAATCCAGTAGCCAATCAGAACCCTCAAACTGTGCCGAGTCCGGACAAAGTACATTACCAGGCGGTTCGGACCTCCATCAGTCAGGTGCTGAAAGTCCTGCTGTCAAACAGTCTGATGAGGCAGAGGACCTGCCAAGCCATGCAACGCCACACACTGCCGATGAGGAGGTAGAGTCTGCAGTGCGGCAGATGAACGATGACGACGAAATCCCCGGTGTGAGCGTTTCCCCAGCCTCGAGCAAAGTCTTCCACTCTTCAGACCAGACGATGCATAGAGCGCCCTCCCCCTGTGAGGAGACGGGTCAGCCGAAGGAGCAGACAGTCTCACCCGATGGAACGAGCCTGGATACCGAGAAAGTGACTTTAACATCGGAAGAGACTGAGCTGCTTCGAGGCGAACCGGCAGATCCTGTAAAGGAGAGTGACGATCGCCTGATTCTAAATTCTTCTAGAGAAGAGGTATTTAGCTTTCATAATTACTCCAAAGATAGAACTTCTGATCAGTCCTCTGACTCACTCCCTTCTTGTGAGGGTGGGGAGTTGTGTGATACACATAATAGTGAGAGCGTTCAGGGTGTGGAAGATTTGCCATCTGGAAATGTGACTCCAGTGGAACAGCTTCCACCCGAGTCGCAGGAACGCCGAACGGAAGACGAAACGGGTGATGCGACTACTGATCAGCTCTCCGGTCACTCGGATCAATCTGCGATGGAGAAAGTACCAGATAGTGAAATCGAAGTTGACGAATGTGTGGCCGCTGTTGAAGAGGATGCCATCTGGCCCCCCGAGGCGATGGACGAGAACGCCGATTCCACGGAAATGCCAAAAATCACATCGGTGTTTTCGTTGCAGAGTCCAAAAAATAGTCCCAAGCTTGGGGTCAGTCAGCTTCCTGACAACGGGCTGGAAATGGGAAGTAAGGCGTCCCCCGTCTCTGAAGCACCAGCCTGCCCTAAAAACACAGAGGAAGTAAATCAGCCTGCTGGAGAGATTGGAAGCCCATGCAGGGCCGCGGCTCTGGGACGAATCCTGGAAGAGCATTCAGATGCAATTATCAGTCATCAGCTGGAAAAGGAGCGGTTTGGCACGGCTAATCAAGACCCGGCTAAGCACACTGCCACTCTGCGCATCATTCAACCGGTCGGTCTGACAGAGGGTAAGAAGCCAGTTTTTCTTAAGCCTTCTCAAAATGGATTCGCAGTACCCTTTCAGGTTGGAGGCAGTCAAGGATTTAAGTTGATTACAGGGTCCTCCATTCCCCAAATAAACGTGTCTTACCTGAAATCTGGAAATGAAAGACCAAAAAAAGCCCCAGGACTTGCCTTTACGCTAAATAATGGCAGAATGGGCACAGTTTCACAGATTGTAGGTGATAAAAAGGTAAGTGATGGGGCAGCAAATACAGAAGTAACGGTGCCGATAAGCTCTCCCGAGAGACCTGCCGTTTTGCAAGCTGGGCGACAAGCTTTCTTACTTAAGTGTATTTCCCCAGTCAAATCGGGGATATTGCTAAACAGTCAAACAGAAGGTAACATTGTGAATCAGAGTTTCCAAGCGAGTGACAGTGGAAGCAATACAGTTTTACTAAAGATTGTTAGAAATTCTTCCGATAGCAGTGTTGGGTGCGGCAGTGGCGAACTGAACGGAATAGCAGCACTAACTGCGACAAACCAGCCTATATATCTCACTACTGGTGCTTTGCAGTCACCTTGTATTTTGATGTCATCCAACCAATCGATTTTGAATGTCTCCACAGGCGGTAAAACACCGGGCCCATCACAAGACTGCTCCATCAATTCCCTCCGGGTTTCACAGGTGTTGAAGCACACCTCTCCAACTTCTGTGCAGGGCAAAGCACAAGAATGGGAAGCTGGGCGAGGAGTAAGTAATACGGACAAAAGCAAGCCAGCGTCTCCGGCGAGAGCAGGACAGGATCTGGCCGTGATCAAGAGGAAAAGGCAGAGAAAGCGCTCGCAAGGAGACTCTTCGGATTCGCCATCGAAAGCCAAGAGGCCGCCGAGCAAGAAGGcgaaagaaaagcagaaaggtGAAGCTGAAACTCCCGAGTCGTTTAGGGGAGTAGAGCCGAAGGATGTTGAGAGGACGCTGAGGCTTTCTCCTTTCAGTCGTGCACAGCTTATCAAATGCCCAAGAAGAAACCAGCCCGTGGTCGTGCTGAACCACCCAGACGCCGACCTGCCCGAGGTGGCCAACGTCATGAAAACCATTAACAAATTCAAAGGGCACGTGCTCAAAGTAGCCTTATCCCAGAGAACGGTCGATGCCCTCTCCGAGTCCGATGCCGGCCCCTGTAAGACGACGCCGGCCGCGATTTCTCACGCCTCTCGTAAGCGGAGATTGAAGCCGCCGAGTCCCGTCAAAGAGCGGTACATACTGAAGCTGAGGTTGAAGAAGATGAGCAGGAATAAGTATAAGGTGGTGAACTCCACCTCGGACCGCACGGAGAGATCGAGCTTCAGCTGCTGGTTCTGCGGCCGGATATTTGATAACCAGGAGGAGTGGATAGGGCACGGCCAGCGACATCTGATGGAGGCTACGAGAGACTgggatacattattttaa

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174884 lncRNA downstream 166433 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 239298 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 254243 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 255187 4495028 ~ 4495418 (-) True G139027
TU174871 lncRNA downstream 273942 4476464 ~ 4476663 (-) True G139026
TU175135 lncRNA upstream 641421 5396339 ~ 5396559 (-) True G139249
TU175433 lncRNA upstream 1402825 6157743 ~ 6158763 (-) True G139496
TU175564 lncRNA upstream 1727349 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 2246747 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 2463951 7218869 ~ 7219192 (-) True G139668
AMCG00002855 mRNA downstream 337 4746747 ~ 4750268 (-) True AMCG00002855
AMCG00002854 mRNA downstream 36299 4678707 ~ 4714306 (-) True AMCG00002854
AMCG00002851 mRNA downstream 149972 4582582 ~ 4600633 (-) True AMCG00002851
AMCG00002843 mRNA downstream 413679 4306326 ~ 4336926 (-) True AMCG00002843
AMCG00002844 mRNA downstream 452269 4282762 ~ 4298336 (-) True AMCG00002844
AMCG00002859 mRNA upstream 43669 4798587 ~ 4826031 (-) True AMCG00002859
AMCG00002860 mRNA upstream 82802 4837720 ~ 4847720 (-) True AMCG00002860
AMCG00002865 mRNA upstream 124359 4879277 ~ 4906202 (-) True AMCG00002865
AMCG00002869 mRNA upstream 299214 5054132 ~ 5060548 (-) True AMCG00002869
AMCG00002870 mRNA upstream 313527 5068445 ~ 5090402 (-) True AMCG00002870
TU174755 other downstream 747801 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 800437 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 2031186 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 3825207 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 3826371 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 2307555 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 2593893 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 3176339 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 3730443 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 4092114 8847032 ~ 8847840 (-) True G140006

Expression Profile