RNA id: AMCG00002851


Basic Information

Item Value
RNA id AMCG00002851
length 1407
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00002851
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4582582 ~ 4600633 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTGTCTCCTGGTTTCAGCTTTCTTCCTGGCGGCCCAGACGCACGGCGCCCCCAAGGAGTACTCCCAGCGGGGAGAGGGAGCCGTGCTGGAGTCGCTGAAGCTCCAAGTAGGATTGCTCGCAAATCAGACCGAAAACTACCCTCCCCAGGTGAAGCCTCCGGGGACAAACAGACGGATCCCACAGAGCATCATCATCGGCGTTCGCAAAGGAGGGACCAGGGCCCTGCTGGAGATGCTAGATATCCACCCCGAGATCGTCGTCGCCGCCACCGAGGTCCACTTCTTCGACTGGGACGAAAACTACGCAAAGGGATTCGACTGGTACAAGAACTTGATGCCTTTTTCTTACGCGCACCAAATAACGGTGGAGAAAACACCCGGCTACTTCACCTCGGCCCTCGCGCCCGAGAGGATCCACCAGATGAACAGCTCCATCAAACTGCTGCTGATCCTGAGGGACCCCACCGAGAGAGTGATCTCCGACTACACCCAGGTCTACTACAACCGCCTGGAGAGCCACAAGCCGGTGCAGGTGATCGAGGACATCGTCATCCACAACGGGGCCTTGAACACGAAATACAAGGCGATTCAGCGGAGCCTCTACGACGTCCACATGGAGAACTGGCTCAAGTACTTTTCGCTGGACCAAATCCACATTGTCGACGGAGACACCCTGATCAGAGACCCCTTGCCCGAACTGCAGAAGGTGGAGAAGTTCCTCAATCTCCCTCCCAGGATAATGCCCTCAAACTTCTATTTCAATCAGACCAAGGGGTTCTACTGCATCCGCAGCGACGGGAGAGAGAGGTGTCTCCACGAGTCAAAGGGTCGCCCCCACCCGGTGGTGAACAGTACAGTGCTGGAGCAGCTACATGCCTACTTCAGAGAACACAACCAGAACTTTTACAGGCCCAAGTCCCTCATTGTGCAGGCATTGTCCTTCATTTTTCAGGTGGCATTCAAGGCATCCCTGCCGTGCACGAGTTTCGTTAGGAGATTCTTCAAGGTCTACCTCGCGGTGGGACGGCCCTGCATTGGCATCACAGTCCAGCCGCTTCCCTTCTTCCTCTGCTCCCTTTTGAATCCCCCTGAAGCAGCTGAATCAGACTTCGTGAGATTCCTGCGGAGAGTCGAGTGGCGGTGCAAGACTATTTCTCAACCGGGCCCGAACGACTCGCACACTAGTGGCCTCTCGCTGCGGGGATTTCGTACTCGGGGTGATGGGGAAAGAGAGGAGGCACTTCTGATCAACACCAGCTGCAAGTTACTCCACGGCAGCTGTCTGATAGCGAGGACGGGAATATTGAAACAACCAGAACTCTGTGTCAAAATCACGCCCGCCCTGTCCCAGCAGCACAACCCCTGCGATTCCCAAGTATGGGCCGGGTTCGACCGAGGGTAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174874 lncRNA downstream 71275 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 86220 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 87164 4495028 ~ 4495418 (-) True G139027
TU174871 lncRNA downstream 105919 4476464 ~ 4476663 (-) True G139026
TU174870 lncRNA downstream 116393 4465954 ~ 4466189 (-) True G139025
TU175135 lncRNA upstream 795706 5396339 ~ 5396559 (-) True G139249
TU175433 lncRNA upstream 1557110 6157743 ~ 6158763 (-) True G139496
TU175564 lncRNA upstream 1881634 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 2401032 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 2618236 7218869 ~ 7219192 (-) True G139668
AMCG00002843 mRNA downstream 245656 4306326 ~ 4336926 (-) True AMCG00002843
AMCG00002844 mRNA downstream 284246 4282762 ~ 4298336 (-) True AMCG00002844
AMCG00002841 mRNA downstream 361521 4219176 ~ 4221061 (-) True AMCG00002841
AMCG00002838 mRNA downstream 546702 4034370 ~ 4035880 (-) True AMCG00002838
AMCG00002836 mRNA downstream 552587 4022581 ~ 4029995 (-) True AMCG00002836
AMCG00002854 mRNA upstream 78074 4678707 ~ 4714306 (-) True AMCG00002854
AMCG00002855 mRNA upstream 146114 4746747 ~ 4750268 (-) True AMCG00002855
AMCG00002856 mRNA upstream 149972 4750605 ~ 4754918 (-) True AMCG00002856
AMCG00002859 mRNA upstream 197954 4798587 ~ 4826031 (-) True AMCG00002859
AMCG00002860 mRNA upstream 237087 4837720 ~ 4847720 (-) True AMCG00002860
TU174755 other downstream 579778 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 632414 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 1863163 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 3657184 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 3658348 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 2461840 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 2748178 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 3330624 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 3884728 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 4246399 8847032 ~ 8847840 (-) True G140006

Expression Profile