AMCG00003111 (LOC106513751,LOC107375490,LOC103376442,LOC108239168)


Basic Information

Item Value
gene id AMCG00003111
gene name LOC106513751,LOC107375490,LOC103376442,LOC108239168
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11786422 ~ 11797059 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003111
CTAATCAGGGGGcgttttctgttctttttctccTGAACTGAATTTTTCCCCTCGCCAGCATCAGTAGCACACAGGCTGCGCTGGAGGAGCATGCATTGGTTGTTgcctttagtttaaaataacGGAATATACgagcatagagagagagaggaaaaaaaagagaaactccTTGGGGATTTTAAAGGGAAACCTGGGCCTTCACGTGATTCGGTAGcggagaacaaaaaaaagTCCCCTGGGTGCCCGAATCCAAGAAAGAATCTCGTATTTGTCCTCTGtaggagagagggagtgagaaagGATGTCAGCaagagggggaaagaaaaaaagcaccaAGCAGTCCCGGTCTGCCAGGGCAGGGGTCATCTTCCCTGTGGGCAGAATGATGCGGTATCTGCGCCACGGGACACACAAGTACCGCATTGGCATGGGGGCACCAGTCTACATGGCAGCCGTCATAGAGTACCTAGCAGctgaaATTTTAGAATTAGCTGGAAACGCAGCAAGAGACAACAAAAAAGGCAGGATAACGCCAAGACACATCAAGCTTGCCGTAGCCAACGATGAAGAACTTAATCAGGAGAAACGGGCAGAAAATAACAAAGAGGGCGCCTCCAGCTCCACTTCAGATGATGGACCTGGAGATGGTTTCACAATCCTCTCCTCAAAGAGCCTTTTCCTGGGGCAAAAGCTTTCACTGACTCAGAGTGATATCAGCAAAATCGGATCCATTAAAGTGGAGGGAATCATCAACCCTACGAATGCAGACATTGACCTAAAAGAAGGAGTGGGCAATGCTCTGGAGAAGGCTGGAGGCAAGGAGTTCCTGGAGGCAGTGAAAGAACTGCGGAAATCCCACGGGTCCCTGGAAACGGCAGAGGCTGCACTCAGCCAAGCCAATGGACTGGCCGCCAAGTTCGTCATTCATTGCAACATCCCTCAGTGGGGCTCAGACAAGTGTGAGGAACAGCTGGAGAAGACGGTCAAGAACTGCTTGTCAGCTGCTGAAGACAAGAAGCTCAAATCCGTCGCTTTCCCCTCCTTCCCCACTGGCCGAAATGGTTTTCCGAAGCAGACGGCGGCCCAGTTGATCCTCAAGGCTATCTTCAATCATTTTGTCTCCTCGACATCATCCTctctgaaaaacatttactttgtcTTGTTCGACAGCGAGAGCATCGGCATCTATGTGCAGGAAATGGCCAAGCTTGACACCAAGTAAGGAAGACCggggtgtgttttgtttcacagtTGTAATAAAGTATCAGTTGGATTTTTAGCAGCCAGCATAGCGTGGGACAAGCGGATTATTGAagtagaagaaacaaaaatggctttttataacaaaacaaaaggttgAGGTAGTTTTGTGAGAAAAAAACAGatccgtgtgtgtgtgaagaagtacTGTATGCTTTTCAATTACACTGTTTTCTAGTCTCCTATCAAAAGTTAGTTAGAGTGGATAGAGAACTGAGagtttctaattttaaaaagatggcCCATGACcccatttcttttattttgggtttgtttctttaactGATCGGTTCTTACATTCCGTGTACAAAGAGAAATTTTAAAAGACTGTTATCTGTTCTTTCCCATGAATATCCTTAGTAGTTTCTGATACTGTTAgtttactaaaaaaaataaaaataaaaatgtgtgtttgacattctgctttaaaataaaaacagatgtttgACTCCATA

Function

NR:

description
PREDICTED: core histone macro-H2A.2

GO:

id name namespace
GO:0005694 chromosome cellular_component
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003111 True 1715 mRNA 0.45 8 11786422 11797059

Neighbor

gene id symbol gene type direction distance location
AMCG00003107 NA coding upstream 186380 11571865 ~ 11600042 (+)
AMCG00003109 NA coding upstream 237634 11546401 ~ 11548788 (+)
AMCG00003108 NA coding upstream 282418 11503027 ~ 11504004 (+)
AMCG00003095 NA coding upstream 429692 11331385 ~ 11356730 (+)
AMCG00003093 alox5,alox5a,lox5,LOC107678516,LOC107589586,LOC107747471,LOC107708393,LOC107582511 coding upstream 455296 11309690 ~ 11331126 (+)
AMCG00003112 LOC106576680 coding downstream 5952 11803011 ~ 11806356 (+)
AMCG00003115 pitx3,LOC103027456,LOC100136798,LOC107699310 coding downstream 100901 11897960 ~ 11911506 (+)
AMCG00003116 NA coding downstream 127268 11924327 ~ 11930101 (+)
AMCG00003122 NA coding downstream 204975 12002034 ~ 12012016 (+)
AMCG00003120 NA coding downstream 324985 12122044 ~ 12130905 (+)
G140738 NA non-coding upstream 152897 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 248468 11537647 ~ 11537954 (+)
G140694 NA non-coding upstream 295760 11488230 ~ 11490662 (+)
G140692 NA non-coding upstream 305385 11480805 ~ 11481037 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding upstream 539144 11245256 ~ 11247278 (+)
G140857 NA non-coding downstream 357754 12154813 ~ 12158751 (+)
G140872 NA non-coding downstream 488988 12286047 ~ 12286276 (+)
G140961 NA non-coding downstream 1024816 12821875 ~ 12831106 (+)
G141066 NA non-coding downstream 1314678 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 1763539 13560598 ~ 13560839 (+)
G140693 NA other upstream 298538 11486191 ~ 11487884 (+)
G140613 NA other upstream 574311 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 1029582 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 1102810 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 1932969 9844776 ~ 9853453 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 574940 12371999 ~ 12678159 (+)
G140939 NA other downstream 933672 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 1081626 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 1309397 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 1927851 13724910 ~ 13743543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000014_01038876_01053268 H2AFY coding CI01000014 null 1037623 ~ 1054033 (+)