CI01000014_01038876_01053268 (H2AFY)


Basic Information

Item Value
gene id CI01000014_01038876_01053268
gene name H2AFY
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 1037623 ~ 1054033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000014_01038876_01053268.mRNA
CTATTAAACGGATGTTCAGCATTCAGAAATAAAGTGTGCATCTTTCCAACTGCGAGAGTGAATGTTTTTTTTATTGCACGTACAGCTAAAAGCAATTGTTCTTAGCAAATAAAAATCACTATTTACACACGTCCTGTACACACACACACACACACACACACAGTGGCTGACCTATAGCACAATGAAGAAGTAACTGTTACATGTAATCCGGATCATGTAATCTGATTCCAGGTCACAGATGTTCAAAGGTCAGATTGGATCAAATCTCGAAAATGGGCTGTTCAAAAGAAAAAAAGATTCGGATATTGGATTATCTTGGTTCTGGACCTAAAAAGTTTTGAATAACACATAATGAAGATTTGATCCAGATCAAAACGAAAAGACTGGTTTATGAACCATCAAAGTTTGGTGTTGCATCTAATCTCTGATCCCTGGAAATGATGATCAACTGTTTTACCGACACTTTTATAGATGTCATCTGACTTGTGGACGCGCTCCGTTGGGCTATTGTCAAGCGCGTGCTCGTCTCCTGCGCGCGCGCGCTCTGCTGATCGAGTGTGTGTGGATCGCGCTGTGGATTGTGGGTGTCCTGGACGCTGTTTGAGCTGGTCTCGCTGTAGCAGACAGTAGTGGACTGAACTCGGACACGTCGCCGTGCTCTCTACTGTAAGACATCGACTGTCATCAGTGCATGAGCTGCTTTTCCACACTTTCAGGTGACTGTCGCGCGCTGCTCGCTCACTGACGGGCGCAGTTCCGCGGGCCGCGCGACTCATCAGGAACTTCCAGCTGTCAATAACAGACAAAACATCGCTGTAGCTTAATGTATCGCTGAATGACACGCGCGTTACGATGTGAACACAGTCACAGTGATTGTATTTCTAATTTAGTCACATAAACTCAAAACAGCGCGTTCATTTAGTGTCGTCACTTCTGTTTTTAAACGAAACCTTGTGCTTATTAAAGACTCTTAATGTTAAAATGTTGTATTTTATTAAACTCGCTTTGGTTGTTGCTATGCAAAAATACCCAAATGTATTCAGCTTTTCATTACAGAATAAAATATACATGCGACAGCATCTAATCTAATTGTTTTAATCTTAAAGGGATAGTTCACCCAAAAATGAAAATTCTGGAAATTTTCTGGTAGTTTTGCATCATTGATTCAGTTTGTTTTTAAACAATCTGTACTGTATAAATGAAGCTGCCTCGACTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGAGCATCATCATGTCCAGTCGGGCTGGGAAGAAGAAGATCAGCAGGTCGTCGCGCTCCTCCAGGGCTGGAGTGATCTTCCCGGTCGGCAGGATGCTGCGCTACATCAAGAAGGGTCTTCCCAAATACAGGATTGGTGTCGGAGCTCCAGTTTACATGGCTGCGGTTCTGGAATACCTGACCGCTGAAATCCTGGAGTTGGCGGGAAATGCAGCCAGAGACAACAAGAAGGGCCGTGTGACGCCCAGACACATCTTACTGGCCATCGCCAATGACGAGGAGCTTCATCAGCTGCTGAGGGGCGTGACCATCTCTGCCGGCGGAGTCTTGCCCAACATCCACCCAGAGCTGCTCTCCAAGAAGAGGGGCTCGAAAGGAAAGCTGGAGGCCGTCATCACTCCTCCGCCAACTGAGAAGAAGTCCAAGACCGCCAAAAAAGCAGTTGTCAAGAAACTGTCCACCAAAAAGTCCACACGAGTAAAGAGACGAGCTGCTGATGCGGACGGCGGAGCAACTGATGGATTCACTGTCCTCTCTTCCAAAAGTTTATTTCTCGGACAGAAGCTGCAAGTTGTGCAAGCTGATATTGCCGCCATCGAAAGTGAAGCCATCGTTCACCCGACCAACTCCACCTTCTACATGGGTGGTGAAGTAGGTAAAGGAGCAGATCTACACTGTCAGAGGGAAAAACCACAGCTCTGCCACTCTGACCGCACAAAAATATGCTTGGATTTGAGACTTTGTAAAGTCTTAGGACGTTTAGGACTGAAAGTGGTCTTGAGTGAAGCCAGCTTTAAACGCGTGCTGATCACAGAGACTCACAGTCGCGTCTCTCTCGCAGGAAGTGCTCTGGAGAAGATCGGAGGAAAGGAGTTTGGAGAGGCGGTTCTGGAGCTGCGCAAGAAGAACGGCCCTCTGGAGGTGGCAGGAGCGGCCCTGACCTCTGGATACGGCCTTCCTGCCAAGTTTGTCATCCACTGTAACAGTCCAGGCTGGGGCTCGGATAAATGTGAGGAGATGCTGGATAAGACGGTGAAGAACTGCCTGGCTCTCGCTGATGAGAAGAAGCTCAAATCCGTGGCCTTCCCTTCTATCGGCAGCGGCAGAAACGGTTTTCCGAAGCAGACGGCCGCTCAGCTCATTCTGAAGGCCATCTCCAGCTACTTCGTCACAACGATGTCCTCCTCCATCAAGACTGTGTTCTTTGTGCTGTTTGACAGCGAGAGCATCGGCATCTATGTGCAGGAGATGGCAAAACTTGACGTCAATTGAAGTAGAAATTCTGTTGATTCAAAATTCTATAGAGAGATAATTAATTTGGGTGGGTGGAGGGGGTGATAAAATATTTTTTGATACTTTATCATAACTCAGCGATTTTTGCATTCCAGGTGTTTGGAAGTCTTTGATTTATTGTTGATTTTTAACAGCTGGTTTGTTGCATTGATCTGCAGCATCATTTTGCCTCTTGTTTGTTTCAATGTATCATGTGTATCACAAATGTTAATATGCATAAAGTGTATATGAAATAATTGATAATATATACATATATGAATGCACGGCTTGTGTAATTTGTGACTGTTGCCAGCAGAGGGAGCCCTTTGTCCAGCGTTATCTTACATTCATAATACAGACAAAGGAAGTTTCGTTTACTTTATACCTGGAGTTATCCATGAGAATTACGACCCATCACAGACAGCAAACAGTTCTTGAACATTCTTCTGCTTTGAGCACGTTCTCAGCCGTTGTTGTGTTCAGCGGTGCTCTGGTTATCCCGGGGTTATTGGCAGTCAGTGGCGGGTCAGTTTCCCAGCGGATCCGCAGACCTCCTCGAAGGGCACCATCTGAGCACTAATCCACAGGAAATACGGGCAGCTCTCTCCTCTCCTCCTCGCAGGAAAATCTCAGTAAATTCAAAGCATCTGTAGGCACGGCTTGTCCTTCCTGCGAAGAGGGCCGCTTTCCCAGAGCTCCGGCAGATGATGTTTTATTCTTCGCATGTACAAAGTAAGCCCGGCGGGGGCAGAGGGCTACGTGAAA

Function

GO:

id name namespace
GO:0035098 ESC/E(Z) complex cellular_component

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000014_01038876_01053268.mRNA True 3278 mRNA 0.46 8 1037623 1054033

Neighbor

gene id symbol gene type direction distance location
CI01000014_01032668_01033192 NA coding upstream 4431 1032010 ~ 1033192 (+)
CI01000014_00989016_01007020 NA coding upstream 30547 988526 ~ 1007076 (+)
CI01000014_00974308_00976120 NA coding upstream 61388 974308 ~ 976235 (+)
CI01000014_00939523_00954114 LARP1 coding upstream 83313 939523 ~ 954310 (+)
CI01000014_00898542_00925988 GALNT10 coding upstream 111396 898500 ~ 926227 (+)
CI01000014_01112526_01115371 PITX1 coding downstream 58493 1112526 ~ 1115375 (+)
CI01000014_01197756_01204104 SAR1A, SAR1B coding downstream 143516 1197549 ~ 1204647 (+)
CI01000014_01276527_01296594 ACSL6 coding downstream 222494 1276527 ~ 1296941 (+)
CI01000014_01300085_01300410 NA coding downstream 246052 1300085 ~ 1300513 (+)
G86177 NA non-coding upstream 7798 1029570 ~ 1029825 (+)
G86153 NA non-coding upstream 14002 1022948 ~ 1023621 (+)
G86176 NA non-coding upstream 15478 1021931 ~ 1022145 (+)
G86172 NA non-coding upstream 17798 1019450 ~ 1019825 (+)
G86170 NA non-coding upstream 21007 1016348 ~ 1016616 (+)
G86186 NA non-coding downstream 14587 1068620 ~ 1068838 (+)
G86215 NA non-coding downstream 27091 1081124 ~ 1081339 (+)
G86210 NA non-coding downstream 89895 1143928 ~ 1144467 (+)
G86230 NA non-coding downstream 118648 1172681 ~ 1172913 (+)
G86195 NA non-coding downstream 169445 1223478 ~ 1257099 (+)
G86111 NA other upstream 266640 770224 ~ 770983 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) LOC113525430 LOC108279047,LOC104924243,LOC108410970,LOC105011194,LOC107757875,LOC107668450 misc NC_047609.1 CM018555.1 25524119 ~ 25549737 (+)
bowfin (Amia calva) AMCG00003111 LOC106513751,LOC107375490,LOC103376442,LOC108239168 coding CM030139.1 CM030139.1 11786422 ~ 11797059 (+)