CI01000014_00974308_00976120


Basic Information

Item Value
gene id CI01000014_00974308_00976120
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 974308 ~ 976235 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000014_00974308_00976120.mRNA
ACATGACTCTCAACTGGTCCAAAACACATTCAAATCAAATCTGCTGAAGAAGTTTCAGTGTCTGTATGAAGGAACAGCGAAGCAGGGAAACCCAACACTCCTGAATGAGATCTACACCGAGCTCTACATCACAGAGAGTGAAAGTGGAGAGATCAATAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGCAGAAACAGAAGACACACCAACCAAATGCAATGACATCTTTAGACCTTTACCTGGACAAGACAAACCCATCAGAACTGTGCTGACAAAGGGAGTCGCTGGCATTGGAAAAACAGTCTCTGTGCAGAAGTTCATTGTGGACTGGGCTGAAGGGAAAGAGAATCAGGACGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGCTCAACTTGATGAAGGACAAAACACTCAGTCTTTCAGATCTTCTTCATGTCTTTTTCCCTGAAACAAAAGAAATGGAAATATCCAGTGATGAATATAAAGTGTTGTTCATCTTTGATGGTCTGGATGAGTGTCGTCTGTCTCTGAACTTTAAGAGCGAAGTGAAACTGTGTAATATATCTGAATCAGCCTCAGTGGACGTACTGCTGATGAACCTCATTGTGGGGAATCTGCTTCCCTCTGCTCTCATCTGGATCACCTCCAGACCAGCAGCAGCTGATCTCGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGATTCAACGAGCCACAGAAGGAGGAATACTTCAGGAAGAGAATCAGTGATCAGAGTCTGGCCAATATAATCATCTTACACCTGAAGTCATCAAGGAGCCTCTTTATTATGTGTCACATCCCAGTGTTCTGCTGGATCTCAGCCACTGTTCTAGAGAAGATGTTGAGTGAAGCAGAGCTAGGAGAGATTCCCAAGACTCTCACTCAAATGTACACACACTTCCTGATCATTCAGACCAACATCAAACATGAGAAGGACTATGAGAAGAAAGTGAAACATGAAGACATGATCCTCAAACTAGGGAAACTGGCTTTCCAGCAGCTTGTGAAAGGAAACCTGATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGACAGAAGCATCAGTGTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTGGGCTTGTATCAGGGGAAAGTCTTCTGCTTTGTTCATCTGAGCATCCAGGAACATCTAGCAGCTCCATATGCACACATTTACTTTACAAACGAGAACAGAAATGTGTTTGACCAAACCAAACCAAGTCTGTTGTCTAAGGTTTTAAACTGGTTAGGGTTAAACCAGATTAAACATGTTTCATTATCTGAGCTTCATCAGAGAGCTGTGGATGAGGCTTTACAGAGTAAGAATGGACATCTGGACCTTTTCCTGCGTTTTCTTCTGGGTCTCTCATTGGAGTCCAATCAGACTCTCTTACGAGAACTACTGACACAGACAGGAAGCTGCTCCTACAACAGAAAGAAAACAGTTCAGTACATCAAACAGAAGATCAGGGAGAATCGCTCTCCAGAGAGATCCATCAATCTGTTCCACTGTCTGAATGAACTGGGTGATGATTCACTGATGCAGGAGATCCAACGTTATCTAAAATCTGGAGGAATAGGAAAAACCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTTCTGACATCAGAGCAGAAGATGGATGTTTTTGATCTAAAACAGTTTATTGGAACACAAAATACAGCAGATGAAGTTCTTCAGAAGCTGCTGCCTGTGGTTAAAGAATCCAGATCAGTTCAGTAAGTCACACCAACAACAATCACTACACTGATAAAACATGATCACATTTATGATTTCAGCATGTGCTTTCTAACCAAAGCAACAAAAGTGGTACATATTCTGGTACATGTGAGACACA

Function

NR:

description
hypothetical protein cypCar_00029587, partial

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000014_00974308_00976120.mRNA True 1928 mRNA 0.43 1 974308 976235

Neighbor

gene id symbol gene type direction distance location
CI01000014_00939523_00954114 LARP1 coding upstream 19998 939523 ~ 954310 (+)
CI01000014_00898542_00925988 GALNT10 coding upstream 48081 898500 ~ 926227 (+)
CI01000014_00717217_00743333 JADE2 coding upstream 230855 717217 ~ 743453 (+)
CI01000014_00688079_00693236 UBE2A.L, UBE2A, UBE2B, UBE2AL coding upstream 280837 688079 ~ 693471 (+)
CI01000014_00630596_00647190 TCF7 coding upstream 325316 630133 ~ 648992 (+)
CI01000014_00989016_01007020 NA coding downstream 12291 988526 ~ 1007076 (+)
CI01000014_01032668_01033192 NA coding downstream 55775 1032010 ~ 1033192 (+)
CI01000014_01038876_01053268 H2AFY coding downstream 61388 1037623 ~ 1054033 (+)
CI01000014_01112526_01115371 PITX1 coding downstream 136291 1112526 ~ 1115375 (+)
CI01000014_01197756_01204104 SAR1A, SAR1B coding downstream 221314 1197549 ~ 1204647 (+)
G86132 NA non-coding upstream 97395 876473 ~ 876913 (+)
G86109 NA non-coding upstream 205040 769057 ~ 769268 (+)
G86091 NA non-coding upstream 289520 683847 ~ 684788 (+)
G86042 NA non-coding upstream 313825 622902 ~ 660483 (+)
G86079 NA non-coding upstream 410892 563126 ~ 563416 (+)
G86151 NA non-coding downstream 3021 979256 ~ 980176 (+)
G86164 NA non-coding downstream 5725 981960 ~ 982673 (+)
G86165 NA non-coding downstream 9879 986114 ~ 986494 (+)
G86152 NA non-coding downstream 34000 1010235 ~ 1010560 (+)
G86170 NA non-coding downstream 40113 1016348 ~ 1016616 (+)
G86111 NA other upstream 203325 770224 ~ 770983 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014430 NA non-coding NC_007130.7 CM002903.2 2673751 ~ 2771688 (-)