G86152


Basic Information

Item Value
gene id G86152
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 1010235 ~ 1010560 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU98121
TCAGACAACAACGATAACGGACTGTTGAGCAGCTGAAGTTTTGTATCAAGTGAGACTGGGCAAAAATTTTGCTTGCAAAAATGTAACAATTCGTATCCTCAATTCCCAAATGATTAACCATATGCAATTAAAAGGAAAGTTGATGTGACACAGTAGTAAACATGTCACATGGAATAAGGAGGATACAATCATGAATGCAGTAATAACAGTTTATTTAGTAAAATCTCAGAAAAAAAATAGCAATGGTCAGATGTTGTGGGTGTAGGTGGAAAGTGTCTCTCTTGATACCACAGAGATTGCAATGGGCAAACCAGTAGAATCCAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU98121 True 326 lncRNA 0.37 1 1010235 1010560

Neighbor

gene id symbol gene type direction distance location
CI01000014_00989016_01007020 NA coding upstream 3159 988526 ~ 1007076 (+)
CI01000014_00974308_00976120 NA coding upstream 34000 974308 ~ 976235 (+)
CI01000014_00939523_00954114 LARP1 coding upstream 55925 939523 ~ 954310 (+)
CI01000014_00898542_00925988 GALNT10 coding upstream 84008 898500 ~ 926227 (+)
CI01000014_00717217_00743333 JADE2 coding upstream 266782 717217 ~ 743453 (+)
CI01000014_01032668_01033192 NA coding downstream 21450 1032010 ~ 1033192 (+)
CI01000014_01038876_01053268 H2AFY coding downstream 27063 1037623 ~ 1054033 (+)
CI01000014_01112526_01115371 PITX1 coding downstream 101966 1112526 ~ 1115375 (+)
CI01000014_01197756_01204104 SAR1A, SAR1B coding downstream 186989 1197549 ~ 1204647 (+)
CI01000014_01276527_01296594 ACSL6 coding downstream 265967 1276527 ~ 1296941 (+)
G86165 NA non-coding upstream 23741 986114 ~ 986494 (+)
G86164 NA non-coding upstream 27562 981960 ~ 982673 (+)
G86151 NA non-coding upstream 30059 979256 ~ 980176 (+)
G86132 NA non-coding upstream 133322 876473 ~ 876913 (+)
G86109 NA non-coding upstream 240967 769057 ~ 769268 (+)
G86170 NA non-coding downstream 5788 1016348 ~ 1016616 (+)
G86172 NA non-coding downstream 8890 1019450 ~ 1019825 (+)
G86176 NA non-coding downstream 11371 1021931 ~ 1022145 (+)
G86153 NA non-coding downstream 12388 1022948 ~ 1023621 (+)
G86177 NA non-coding downstream 19010 1029570 ~ 1029825 (+)
G86111 NA other upstream 239252 770224 ~ 770983 (+)

Expression


Co-expression Network