AMCG00003439


Basic Information

Item Value
gene id AMCG00003439
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 3404970 ~ 3415285 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003439
CGCCGGTGCCTTTGAGTTTGACAGCTCCGTCCATCGGCGGCCGACAGCGGGCGTTGTGCTGGGAAGGTGGACCTGAGTGAGAAAGGCACATTGTGCTGCCCTTATAATCACATGAGACAATAAGATACAACCATGAACAGTAAGgcAAAGGCAACAGGTCTGATAACGCAGATCAATAAGATATGTCCAAATGCGGCAACAACTCTTACAGaagCAGACATAGATGATGCACAACTTCTAAATCTAACAAGGCAAGATTTGAACGATCTGCTTCCAGGCCCATCCAATTTTAAAATTAGGAGACAAATCATGGATCTTATTACCTCTTCAAAGCAAAAGCCAATATGTCCTACTGTGGAGTCACTAATGAATTCACTTCTGGACCTCGTTCCAAAAAATACAGCTGAAGATCTTAAaaGAGCGCTTGTTTCTGGCAATGTTCTGCACGAATATCGACACATTCTTAAAGACATGGAGATGCAGTTGAAAGGTGTCCTGGACTTCCTACAACAGCACATTCACCAGCTGGACAGACTAACACAAGACAATCAGAAGCAAgttgtggaaaacaaacacaaggaaGAAAGGCCAAGTGAAAGTCACTCCTCCAATAAACTCCATCAGCCTTCGGAGGACCCATGGACATCTATATATCCTCCCAAGTCAGatgttttgaTTGAGATTGTTCATGGCCAGAATATGCTGGGGATAGAAAGGATGTTCATGAGCAAACTCAGTCAGCATCTGGCCAATTTTGCAGTGCAAGTTGTGACTAAAACCTACGATCATACCTCTGTGAACTCGGTGCTGCTGTTCTGCCCTGTCTTCTCCCGAACTGGGACTGTTATTGAGGAAGCACTCAAGAAGATTCcttCCACCAAAGAGATTGTCCTGGTGGTgatgcaccacacacacaaccccgACCTCGTCCTGGCCGAGAGCAGCAGACTGGTGAAGAAGTGCAACCTAGCAGAGATCGTGGACTGCCTGTTCCATGAGTCCAGAGGGTTGCTGGAGTGTGAAATCAATAGCCAAGCCATATTACAAGTCTCATCTGCCTTACAGAAATACCTTACATAAGATAGGGACATCAGATAACAGccattttaaatggaaaggcCGCAGAtgcattgtatatatgtatgtacttaACAAATACTGAACATTTAACTTTCATCATGATCTCATGAacaaaggttttcaaaatggaGGTGATATTACATAATATGACTTTTGACAGGTCTCCAATTGGCAAGTCCCAAACTCCTGTAATATGTGAAGAGATTCAAGAACAGCATTGTGTGTGTACGCCAGCTCTGGCACAACCCTTTATTGTGTATGGGTGAGAAGAATCAACacaattaaaccaaaacatcTCGGAGTTATGCATTTTGGGGTGGAGCATTCTCCACCTGctttaaacagaaatgaatgaaaacagtgtTAAGAGAAAGCTCTGCATGCAGTCGCTGTTCGGGATCCATGTCACTGGAGGTAGAGTTTTATGCAGTTATGCTGCAGTAGTGATGTAGCCAGTGCCGCACACTACGATACAGCTCTCCACACACTATAATCACACGATGCAGCTCTTTAGGACCGAAGTGTGAGAAAACCTGGTGCTCACCTTTCTCATTTTGAAACCTTCGTtctgaaatgttaatgtttgtgTAGTTTTACTGACAATATGATGACATTTTCAATATCATTCCAAGAAGACACCAAGTTCATTCCATTCTCAGCCACCTGCACTCTGAACTCACAGTGCTGGAGACTAAAAGACTTGTTACGAAGCTCCTGATGCAATGCAAAAAAGCTTTGAATTGACAATCATTCAATTTATTAAACCACATAACACAGAAATCTAGACTTTATAAACACGCACATCCTTACGAAGTGGCAAAAAAGCACAATCTCATCTTAGCTTAAGCAAAACTTGTGTGTGAGGAAATATACAGCTCCAGTACATGAGGCCTTTGTTCACTGCAGACAAACTGAAATAGGAAGACCTTCTTAAACTGGGAGGAACTGTGACTGAGAGCCTTTCATTTTACTTCAACCTTTCCTTAAAACCATTCACGATATTCTTGTAGCACAAGACCGTGCTACAGTGGCAGATGTTTTGTGAAAACAGTTTAGTTTGTATTAAGTTAGCAATTGTCACTGTCTACGGCCACATCAATGCACAAGTGGAGTACAACAGATATATGCAATGTCAGTAACACTTGAACAAAAGAAATCTAATTCAAATTCGAACTGAAGGATCCATGCTGTGTAATACAGCCAGTgttaatgcatttgaaattattattattttggcgCATAGATGATTTgtgctttaattaaatcttgGATGGATAAAGTGCAACAAAATCCCATATAGGGATAAACAAGATGCGTCCCACTGATCTACTCAAAATCTGAATGAGACATTTTGTATGGGTAAAACTGCCAATTGATTAATctgtaatactgtaaaataccaTAAACCCTATTATCAATGTGACAAAAGACTTCTACCAGCCGATGCAATCCttttctaaatattattattattattatttttatttcttggcagacacccttatccagggcgacttacaacataagtgcaaacaaaatgcaaaaatacagagaagtacaaggtaCGAATATGCACAAAAACTGTTGATTCCAGTGTTAAATGATAACTTGCCAAAAAGCTGAAGCACAGCTTTTCCTGAACGCAGGCCAGTCACACAGACAGCCTATGTAAACCAGCAGTTACTGAGCAGAGCAGAGAAATCCATCAGAATGTTTCCCTGGTTTGAAATATGAAGACAATCAGTGTAATTAGAACAATCATAATAACTGGTGCTGTTTCAAGTCACGTGCTTTACTTTCACTTGAACTGCTTTGTtgaacttttctttttgtatgcAATCCCTGCAGtgtgtaatttttaaaatggtttgtttatGTAGATCAATTTGACTTTACTCTTTCAGGATACTCGAGAAACAAATCTCAATTCTCATTTCCTTTGATTCTCTTCAGGGCTGCACGATTGCATTTTCAGAATTAGGGTTAAGATCTTGATACACAAGTGCCTACGCCGATGTGTTCTGGACCTGCATTAAAACAGAATACACTTCTTATGTAGTCTGGATGAATTCCTTTAGGGAGCCTCTTCTACTTGGTACAACAGGAATaacagggaaaaacaacaactttgtagCATGGGTGACACAACATCAGTCATTCAGCTACACCTGTTTTgtcctgttgtttttcttgggCTACCATCACCTTTCACAGTATCTCAGGTGACGTGACATGTTTACGATTTCACCACAAACAGGGAGACGCAAACTTTTTTAATCACATACTAACTCAACAGCAGGGAAATAGACCAgcgatttttgttttaacaaaccCCTGGTGTCATGAAGCCTGCCATTTCTATTGAAAACACTTGCTTGCTGTCAGTTACCTAGTGGATCTTTCTTTAGTGGTTGTATAAGATTTTATTCTGATAGAGTAACACCTGAATTCCTGCAccttaaatgtttaaaagctCACACATCGCCTAACTTGGAAGATTGAAGGGTTCTGTGTTGTGTGAGGTTAATGGTCTCCATTTTTagagatatataaatatgcaaaggCAAATCTCTCAGAGGGATTGCTTCAAATTTACAGCACCAATAAAAGGAATGCGGACTCCCACTATTTGGACTTCTGATCATATTTAAAAGTTTCTTGAAATAGTGGCCAAAGAcctttaatcttttttatttttaaatgtatagacataatagtaatattaactGTACTTGATCCATGTGAATGTTCTTGTGGATGTGTTTTTTGAAGTCCCCTGTTTAAGTACTCCTGATTCATCTGTGTGCATTATTTGGTTTGAATAGGTGATGATTTTTCATTGTAAGTgagcaattaataaaataaaatgaatcttCAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003439 True 3962 mRNA 0.40 7 3404970 3415285

Neighbor

gene id symbol gene type direction distance location
AMCG00003440 NA coding downstream 4286 3398726 ~ 3400684 (-)
AMCG00003436 NA coding downstream 113743 3290037 ~ 3291227 (-)
AMCG00003437 NA coding downstream 154248 3239884 ~ 3250722 (-)
AMCG00003435 NA coding downstream 187884 3213811 ~ 3217086 (-)
AMCG00003431 galnt14,LOC106607829,LOC106571428,LOC108429358,LOC107676246 coding downstream 679051 2674158 ~ 2725919 (-)
AMCG00003443 NA coding upstream 51517 3466802 ~ 3536015 (-)
AMCG00003449 NA coding upstream 293828 3709113 ~ 3714240 (-)
AMCG00003451 NA coding upstream 437862 3853147 ~ 3855295 (-)
AMCG00003461 NA coding upstream 676807 4092092 ~ 4120379 (-)
AMCG00003464 NA coding upstream 794462 4209747 ~ 4211902 (-)
G500 NA non-coding downstream 193093 3195905 ~ 3211877 (-)
G464 NA non-coding downstream 293919 3086465 ~ 3111051 (-)
G458 NA non-coding downstream 346766 3006968 ~ 3058204 (-)
G453 NA non-coding downstream 399289 3005372 ~ 3005681 (-)
G372 NA non-coding downstream 998886 2405643 ~ 2406084 (-)
G541 ccdc25 non-coding upstream 8803 3424088 ~ 3428291 (-)
G578 NA non-coding upstream 108739 3524024 ~ 3525095 (-)
G586 mtmr9 non-coding upstream 181636 3596921 ~ 3599589 (-)
G624 NA non-coding upstream 447712 3862997 ~ 3865429 (-)
G664 NA non-coding upstream 505711 3920996 ~ 3974710 (-)
AMCG00003422 NA other downstream 966149 2427397 ~ 2438821 (-)
AMCG00003423 NA other downstream 1003075 2397642 ~ 2401895 (-)
AMCG00003400 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 2447774 945223 ~ 957196 (-)
AMCG00003444 NA other upstream 120887 3536172 ~ 3538967 (-)
AMCG00003459 NA other upstream 460947 3876232 ~ 3895524 (-)
AMCG00003476 NA other upstream 1167857 4583142 ~ 4808989 (-)
AMCG00003484 NA other upstream 1928785 5344070 ~ 5356468 (-)
AMCG00003550 NA other upstream 5593832 9009117 ~ 9082850 (-)

Expression


Co-expression Network