AMCG00003484


Basic Information

Item Value
gene id AMCG00003484
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5344070 ~ 5356468 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003484
CGCGCTGCGTGTGTCCGAGGCGCCCGGAGCGGCTGTGTCGGCCTCAGCGAGCCGCCATTTAACAGCGACGGGACGGGAGCGCGTCCGCACGGCGCACTGTATACTGCAGGATACTACAGGATACTGCAGGATACTACAGCACACATTGAACATCAGCATCGGTTTGTCTTAACGCGCTTTTTATTGGAACgggtttctttttctctccgGAGAGATGGAGGAAGATGCCGAGCAGCTGATGGAACAGATGGAAACTCAACCAGTGATCACAGATGTAGCAGCTTCAGACAAGTCCAGGAGGGGCATGGGGCGGATGAGGCCATATCCAGACCCCCGGGGCCGAAGGGGGGACATGGTTTCCCCCCGCCCCCGCCTCCAGGACACCCAGGCTTCAGAGGCCGGCTCCCCCTCCCCCGTGGCAGAGGGATGCCCCCCGGCCCCCAGGGTCCCTTCCACCACAGAGGCTTTCCCAACGGACCtgctcctccgcctcctccgcCACCTGGCAGGGGCCAGCGGTGGCCTGGGCCCCCAGGGTAACATAGTCACCCTTTTGAAGCCTGCGGGAGACGGCATGCAGACCCCCCAGGAGCACACAGCCAGCACCAGCCGAGGTGAGACTCCTTTTGTGTCCCGCTTTCTAACAGATCTGTCCGGCAGTGCCTCTGCTGACCACTGCGTCTTCTGGTCTCGTTCCACCTGA
>TU1027
CGCGCTGCGTGTGTCCGAGGCGCCCGGAGCGGCTGTGTCGGCCTCAGCGAGCCGCCATTTAACAGCGACGGGACGGGAGCGCGTCCGCACGGCGCACTGTATACTGCAGGATACTACAGGATACTGCAGGATACTACAGCACACATTGAACATCAGCATCGGTTTGTCTTAACGCGCTTTTTATTGGAACgggtttctttttctctccgGAGAGATGGAGGAAGATGCCGAGCAGCTGATGGAACAGATGGAAACTCAACCAGTGATCACAGATGTAGCAGCTTCAGACAAGTCCAGACATGGTTTCCCCCCGCCCCCGCCTCCAGGACACCCAGGCTTCAGAGGCCGGCTCCCCCTCCCCCGTGGCAGAGGGATGCCCCCCGGCCCCCAGGGTCCCTTCCACCACAGAGGCTTTCCCAACGGACCtgctcctccgcctcctccgcCACCTGGCAGGGGCCAGCGGTGGCCTGGGCCCCCAGGTGGCAGACGCTTTTAAAGCTGCTTACTTTTAGTACCAAGCGCTTTCATAGCAGGGCCTTCAGTGCTCACTTTTACCACCCGGCTGGGCTGCCAACTGCCTGTTTTAAGGCCCTCGAACTAAACTCCCCAATCCACCCCTACCCCGTACTTCCCCTTGTGCATGGGGCCCAATCGTGACCAATTCGAGATTTAAGACCCCTCCTTGGAAGATCTAAAAGCAAGGTCTAATTGAATCTGCCAAGGCCCACCGCAGTACACTACGGACAAACTACTGATTTTAAAGCAAACCATGCCCATGTCAGAGAAGACATTTACAATTGCGTTTCTTGAGCTaaaaattcagaaaatgtgtggcatgtgttttttttgttttttgtttttttttctttttaaagaagagTGAAGATTTTATGTGCTCTAAGAATGAAGCATTGACGTGctcctcttttttcttttttctttatcttttttttttttaacgaggATGATGACAAAACTAAGTAAAAAAATTTAAGTTGTTTCTAAAGCTGATGACCCACAGCTAGGTCATTCTCATTCACTGTACAGACACTTCCTGCCCAAGACACAAGAGATACAAACAAATGAGGCAAAACGAGCCTTTGAGACACGATCATTTCAGTATCTGTACTGCAGCCCTCATGCACCAGTGTTTATTAGCTCAATATTTAGTTCTGTGACTCCTTGGACCTTTCCAACTTTGctgttatgattttttaaataactcttCATTCAAATACAGCATTTGCTGTAAGGACTTGTGCTTAATATCATATTCAATGAAAAATCATGTCAACGTGTTTAGTTTTAAGAACCCTTTAAAGTAATACTAAGGAGTTTTAAGATCCCTAATGTGcagctattttaaataaaatgttgtttggATCCAGTTCTGTTTGTGTACTACAAGCTGTTGTGGAATGATcttttttatgaatgaatattaatgaatataattttgaattaacgtaactaatatatatttataagcaaattactaaaaaaaagtaattgctttaatatgaaatatatatattctatattctgTGTGTAGTCATGAAGTGTAAtcatacttttaaataatgtaaattatataagtTATGTGGATTTGTGAATGTactttttgaagaaaaaaaaacattaacagctTTGGCTTAGTCATGaaggacaaaataaaagtaaaaatcaaCTGTGACctgttcctttttattttttaacttaaatttgtaaatgtttcttttcttcatctACAGCTGGACTTTGTTAACATGTCAGCTTGAAACGTAAATGTAATTAGTCTGAGAAAGTGTGAACTGCAACACTTGATCTGTCACAATATGTGTGTGATAACTCCAAAGTTATACTGATGACAGTACTGGTGAAATAACCTTGTTGTTCAGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003484 False 703 mRNA 0.62 6 5344070 5356468
TU1027 True 1904 TUCP 0.51 4 5345839 5356468

Neighbor

gene id symbol gene type direction distance location
AMCG00003479 NA coding downstream 118599 5190549 ~ 5225471 (-)
AMCG00003477 NA coding downstream 189475 4879820 ~ 5154595 (-)
AMCG00003471 NA coding downstream 778510 4562401 ~ 4565560 (-)
AMCG00003472 NA coding downstream 790836 4547613 ~ 4553234 (-)
AMCG00003470 NA coding downstream 821072 4521548 ~ 4522998 (-)
AMCG00003482 NA coding upstream 1118 5357586 ~ 5358050 (-)
AMCG00003483 NA coding upstream 4619 5361087 ~ 5373418 (-)
AMCG00003486 NA coding upstream 52330 5408798 ~ 5413661 (-)
AMCG00003488 kbtbd11 coding upstream 197013 5553481 ~ 5555742 (-)
AMCG00003489 NA coding upstream 276994 5633462 ~ 5733437 (-)
G862 NA non-coding downstream 2083 5340461 ~ 5341987 (-)
G845 NA non-coding downstream 9312 5330726 ~ 5334758 (-)
G844 NA non-coding downstream 14296 5329572 ~ 5329774 (-)
G811 NA non-coding downstream 203825 5132700 ~ 5140245 (-)
G804 NA non-coding downstream 212369 5131467 ~ 5131701 (-)
G942 NA non-coding upstream 395609 5752077 ~ 5755468 (-)
G946 NA non-coding upstream 431600 5788068 ~ 5788321 (-)
G961 NA non-coding upstream 472979 5829447 ~ 5829749 (-)
G982 NA non-coding upstream 598636 5955104 ~ 5955319 (-)
G993 NA non-coding upstream 630097 5986565 ~ 5986975 (-)
AMCG00003476 NA other downstream 535081 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 1448546 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 1805103 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 1913798 3394657 ~ 3430272 (-)
AMCG00003422 NA other downstream 2905249 2427397 ~ 2438821 (-)
AMCG00003550 NA other upstream 3652649 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 4496731 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 4518202 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 5268878 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 5594616 10951084 ~ 10956353 (-)

Expression


Co-expression Network