AMCG00003483


Basic Information

Item Value
gene id AMCG00003483
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5361087 ~ 5373418 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003483
ttgacaGGCAGTCGCAGTGAGGGTGATGCGGGTCAGTGAGTTATGGCCCATCCTGGAGCCCGTGTATTTAAAGAGGGTGCGGATTCAAAGTTGTGTTTCttgatgttttaatgtattgacaGGCAGTGTAGTCTGACAGTGAGGGTGATGGGGGTCAATGAGTTATGGCCCATCCTGGAGCCGGTGCGGGAGTCCGTGCCTCTCTACAGCCTCCGAGGACTGACCTTCGCGGTGGATCTGAGTCTGTGGGTGTGCGAGGCGCAGTTTGTCAAAGAAATGGCTGGGAAAGTCACCAAACCTCATCTCAGgaatttatttttcagagtcTCATCTCTTACACTAATGGGAATAAAGCTGATTTTTGTGATGGAAGGAGAGGCACCAAAACTAAAAGCTGAGACAATGAATAAGAGGAATGAGTTGAGATTTGGACATTCAAAGAAGCCTGTGTCAAAGCCTACAAAAACCGGCAGATCCCACTTCAGATCTGTGCTTAAAGAGTGTGCAGAAATGCTTGACTGTCTTGGCATTCCCTGGGTGACAGCCACAGGAGAAGCTGAAGCCATGTGTGCCTACCTGGACATCAATGGCTTTGTGGATGGATGTATTACTAATGATGGAGATGCCTTTCTTTACGGAGCCCAGACAGTTTACAGAAACTTTAACATGAACAGCAAGGATCCACAGCTAGACTGCTATAAGATGCAAAAAGTGAAATCTAAACTTtatctggagagagagactctCGTGGGTTTAGCAGTTCTGCTTGGTTGTGATTACTTACCGAAGGGCATACCAGGGGTTGGAAAGGAACTGAGTCTAAAGCTTATAGATGCATTAAAAGGAGAAACTCTCCTTGAGAAGTTTAACCAATGGAAAATGCATCTCCcggtatttgaaaataaagagaaGGCAGTTAAAAAAGTCACGCATTGCCTGGTCTGCCATCATCCAGGTTCTGCTAAGACCCACGAGCGCAGTGGCTGCAACCTGTGCAACAGCAGCCATTTCTGTGAGCCACAGGACTACGATTACTCCTGTCCTTGTGACTGGCATCAGGCCGAGCGAGGAAGGCAGGCGAATGCAGTCGAGCTCACCGTTAAAAGGAAAGCCCTGGCATGTGAAGGATTCCCTTTTCCAGAGataatCAAAGAATTTCTAGTATCCAAGGACAAGCCTGTTACAAACATCAAGTGGAGAAAACCAAACCTTTCTTTGATGCAGAAATTTGCTTTTGAAAAGCTGGATTGGCCGAAGCACTATACTAGTGAGaaggtgctggtgctggtgacGTACGCAGAGATAATAAACAGAAAGTCTGGGAGAGACATGACTGCACAGATACAACCAATAAGGGTTTTCAAGCCGAGAGTAAGAAATGGAATTTCGTGCCTTGAAATAATCTGGAAGAAACCAGAGCACTACACATACGCCGAGGATGTCCCTGTCGCGTCTCAGACCACAGTGAGGACCATCGAGGAGGAGTCTCTCTTCCGCTCGGTGTATCCGGAGGTCATTGAGCTCTTTCTAAAGGAAAAGGCCGAGGCGGAGGAGAACAAACAGAAACACAAGAAGAGAAAGCCGAAGGAGCAGAAGACCATGTCTGATGACGTTTCAGACCTCTTCGCTCAGATGAGAATACAGAGCTCCTCCGAAGGGAACTCAGAAACAGCTGCTGGCGCCACTCCTGACAGTCCCACAGTCGCCGCCACAGACGATGCGACGTACCGGCAGCCGCTGGGCTCTCCACTCTCTTCTAAAGTAACTCCTAGTCAacgggagagtgtgtgtgaagaCCACACGAAAGAGAAAAAGGAGGCGGCAGATTGTCCTCCGTCTCCTGTCCCATCTGACGAGCCCAGCCTCACTGCCGCCTCCCCTTTAGAGTCTGTGATCGAGAAGCTGCAGTTGAGCGATATTGACTGGGCAGCCACGTCTTTCGGAGCATCTCCGTCTCCACAGGTGCCACCTGCGCCCCTGTTGGCATTGCAGCACACCGGGGACCTTGCGCCTGTAAAAGGCAGGAGTTATGATAATCCACTGAAGCGTACAGATATTTGCACAGGAGTATCTAAGGACTTCCATTTCCGTAAAATACCGATCAAGCCCACAACGCAGCCCACAGAGAGGTTTTCCAACCCTGGATCTAGCCTTCCTGTGTCAGAGCTTTCCTTCAGAGACCGCGTCCTGATGAAGAACACACAGCAATGTTTCAACACTAATGTGAGTCTCTCAAACCCACTGAAGGATGCGACTCCAGTGGAACACAACAACGCAGCCCCTAAATCACTCAAATTACCTGCTCAACAAATTGGCAAGGCCATCCACACTGAAAAAGAGTCGGCATCTGCATTAGAAACGTTGCTGGCTACAGGTCCGAGGCCCTGCAGTGAGCAGAACACTGGCTTCTCCATTCCAAGACCGAAAACAACTCGTACGAACCACAAGGCCACTGGCGAGAACTTCCACAGAGAGACTTCTACAGTGAAGCCTTCATACAAAACTCAGTCTGTCAAACCTAGCAGTCGAGCTCAGATTCCAAAAGGCGGCAAGAAAAAGGCCATTAAAAAGAGTGTCTGTCAGAGTCTGTCTGCTAGTGAAGACAGCGATGCAGAGAATGTACAGCTTGTAGTAAAAACAACGGTGGGGTTTAAAACTAAAGCTAGTTCTGCATCGTACATTGATGACAAAAAGCCAAACAAGACAATCTCATATTCTGGGTCAGGCAATGCAGTCGTGCGCGATGTACACATCGTGTCACGTATAGCGTCAACAGAAGCGCCTGTCAGCAGGCAGAACCACATCGCAGAGCACGACGTGAGCGCTCGGACCGGGGACAGCGTGTGTGCCCGCCGGGGAGACGCGCCTGCGCGCTGTGCTCTGAGTCCCGGCCCAGGCTCTCCCGCGCCCGACGCTGCAGGAGAGGACTCGCTCATTTCCCTGGACAGCCCGCTGCCTCTGGCGCAGAGGCTGAGACTGAAGTTTGGAAAATAATGGGATTCAAATGTAAAACCCGTCAATAGCTCTAATTACCCTCTTCTGCCCTTTAAATGTGACATTGCTATTTGATACACTGTATGGGAATGTTACAGTTGAACCGATGTGGCCGGTCGCTCTTTACCTCTCTTCAAACAACTGCATTGCATttctgtattgttgttttaattatgattcTTTGATTATTAAGAAATACCATTTCCACTTTCCATCATATTATTCTGATGATGTGCTTATGTTGCCTAAGCCAGTGCATGTgtaattgtgtatgtgtatttgcaatcactcattaaaacattatttcatgtgtggttacttttttttacattcatcaAAACCAAGCGCGAATTTGGTcaaacattttgaatgtttgtatTCGAG

Function

GO: NA

KEGG:

id description
K15338 GEN1, GEN; flap endonuclease GEN

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003483 True 3378 mRNA 0.48 13 5361087 5373418

Neighbor

gene id symbol gene type direction distance location
AMCG00003482 NA coding downstream 3037 5357586 ~ 5358050 (-)
AMCG00003479 NA coding downstream 135616 5190549 ~ 5225471 (-)
AMCG00003477 NA coding downstream 206492 4879820 ~ 5154595 (-)
AMCG00003471 NA coding downstream 795527 4562401 ~ 4565560 (-)
AMCG00003472 NA coding downstream 807853 4547613 ~ 4553234 (-)
AMCG00003486 NA coding upstream 35380 5408798 ~ 5413661 (-)
AMCG00003488 kbtbd11 coding upstream 180063 5553481 ~ 5555742 (-)
AMCG00003489 NA coding upstream 260044 5633462 ~ 5733437 (-)
AMCG00003490 NA coding upstream 473480 5846898 ~ 5851181 (-)
AMCG00003491 NA coding upstream 541229 5914647 ~ 5969984 (-)
G862 NA non-coding downstream 19100 5340461 ~ 5341987 (-)
G845 NA non-coding downstream 26329 5330726 ~ 5334758 (-)
G844 NA non-coding downstream 31313 5329572 ~ 5329774 (-)
G811 NA non-coding downstream 220842 5132700 ~ 5140245 (-)
G804 NA non-coding downstream 229386 5131467 ~ 5131701 (-)
G942 NA non-coding upstream 378659 5752077 ~ 5755468 (-)
G946 NA non-coding upstream 414650 5788068 ~ 5788321 (-)
G961 NA non-coding upstream 456029 5829447 ~ 5829749 (-)
G982 NA non-coding upstream 581686 5955104 ~ 5955319 (-)
G993 NA non-coding upstream 613147 5986565 ~ 5986975 (-)
AMCG00003484 NA other downstream 4619 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 552098 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 1465563 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 1822120 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 1930815 3394657 ~ 3430272 (-)
AMCG00003550 NA other upstream 3635699 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 4479781 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 4501252 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 5251928 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 5577666 10951084 ~ 10956353 (-)

Expression


Co-expression Network