G845


Basic Information

Item Value
gene id G845
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5330726 ~ 5334758 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU1009
GTGTTGTCCACAGTGcaagttttaataaataagaacTGGAAGCAAACTCGTCAGGCGTACATTACACGTACCTTACAAAACAATTgtagaaatagaaaaacaaaaaaacagcaacaaatagGGAAAGAATTTCACAATCAAGTAACAAAGACTAATAATTCTTGGGCCACGCTTTAATCCTGGTTTATTATAAAAAGTCCAGATTCAACAGTACAAAATATCTACCCTTCCCGCAGTAAAAACAACATCACAGATAAAtatctctgtaaaataaaacattatccatatgcttaaaaatatatttatatatatataaacctattTACATCTCTTGTCACTCCCTTGAGAAACATACAAAAAGATACAtttccaaatgaaaataaaaataaaaatcagcctCCAACTTAACATTTAGAATAATAActatagtaataaataaaataaaaaaacattcattagtccctcaaaaaaaaaaaaaagcaggggCTAAATATTTTCTGTTAGTTACAAAAGAGActtaatgacattaattaaatgacaaacTTAACTGACATTCATTAGTGGTTGTAATTTGAAGCGTTTACTTCAAGAACAGCTATGAAACTTGTGTCAGGGCTCGGCAATCCCAGTCCTTGAGGACCTGCGTTTGTAGGATTCACAGCACCTTCCACTTAGCAactgatttaagaaataaacGAGCAATTTCACTTTTTATCCTAATAAAGACTTCCCTTAATTAATGAAGACCTGCGGTGGAATGCAATCCCAGAAACCCCCTCGGCCCAACAGTACTGGAATTGCCAACTCATTCCCCGTGTCATATACTGTGAGGAACTGGTTTTATCTTGTTTGGGACTGGTATCGATCTGCTGCCTCGACTACAATCAAATGAAAACTTGTAAACTTCACTTTGACGTGCATTGAGACAATATATGGCACTTTAGACCTGACCAAACCTGATCTCTTGTCATGCACcatattttttaacagcaaATACTTATGTATTTCGGTCCAAGGCAATTGAAAAAACCCGAACATCACTATTAGTTATATTTCAGTAAAGGCAAGTCCTAAATGTAATGATGTAATGCTGTAGTACCTTCTGCTAAATAAAAGTACATCAGATCCCCACAGCAACTGAACTGTTGAACCACCAATCATACAATCAAGCAAAGTCACCTGGGGCTGCTAGACGAGCCCTCCCAAACCTtaattagatatatttaaagaaatatttaaGAAGAATGAAATACAACAGTATCTGAAGTCCATTGGGCTCACTTTAAGCCTCTTCACAAAATAATACTCCCTTTTACGATGGGAAATGAACAACTGACATGAAATTTGACAATGTTGAACTAAATGAAAGTGTTGGTAATTAATACAGAGAACTCACATATCCCAGTTATGCCACATTAACACCACTGTATATTGACTAGTATCTACTATTACTGTGCACTGTTTTGGATGGGAGTTTTGAGAATCGAGCACACCTCAATATCAGTTCTCCTATTTCCGTTAGTATGGAAGGATGGAAGGAAGGACAGAAGGGGGCGTTATCGATACATATTTGTGGAACCTGTCTTTAGCTACACAAAGTCATTTCTCcacgggggggggggttaatgtaaacattaagtgcaaatataaacacaattcagCATATGTGCTGTTAGGTACCTCATTTCAAATCGCTCTATATCAATACATCCTCAGTGTCATTTTCAATTATAACTACTATTAACTGTCTTCCATACAGTAGGCAAAGTATATGTACTCCTGGTAAGTCAAGGGTTAATAGTGGATTAGACTTCCCTTTTTACTAGTTTACAGTTGATGTAAGGCAGCAAAATACTTGCCTCGTggcttgatttattttaaaataatgaacttACATAGAACAAATAGCAGTGGACTTTAGAGCACAGGATGAGTAAACTGTTATCCCAGTGTGACTGTGCTTGGCATCTTCTGTGTATTCATGGCTGCCCGCCGGAGACCTTTTGTGTCCatttgcacatttcatttttaacgAATTATGAAGATGCAAACGGTTCTGTCCTGAGAGCCACGATATGCTGTGACACTCCTGCACTGTCCCCGAAAGACTGAAAGTGCTGTCCTGAAATCTTCCACCAGTTTGCCCAGAATGCAATACTTAGCAAATGTGACGAAATATGAAAACATGTCaaggatatatatacatacaaactatAGCCATAAACATGTAAAGACCTAACATTTCAAACCTTTCTTCCTTTTGCACGGTATCTTGAACAAGAACtgataaatcattaaaatcttttcaaaatcctatgaataaaacttcaaaatatGTTACAGATTCTGGTTTTGGTATACAATTCATTCAGAATAAtcctgtttctttatatttattttaaagaggataatgctttttattatatatgtacttttaaatatgtgttttgtccCTTAATTACTATTTTGTGGCTCGCTGGCTTGCGGTATACCCTGGCACTGACATTGCTAAATACAGCCTTCTAATTCCAAAGgcaatttgaatgtaattgtatgtatttactatTCTGGAAACTGACCAGCAGTTTCTCAAGCCCGCCTCTGAGGACAGCACGTCTGTGTCAGACCCCCAGCGATGTTTGGTTCAAGATGAGCAGTACCTGCCTTTTGGGACCATTGTGATATGGAAATGGCCCCACATTCACCTGCCTGTCAGAGAAGCCTGTTGGTTAAGAACATCGGTGGTTCTGATTTCCACTGTTTTCATCCATTTATCATCAGAAGTTTATAGCTGACCGCAGATAAATGTAAGGAAAATGGTCAATTAACAAGAATTAACAGTCATCTTAAgtgtccagaaaaaaataaatggtccGAATCCTTTGAGTTCTTTGAGCCTAACCGAgcttgtctgtgtttttcttatacTGTGATGCAACCATCAAGAAAACCATCAAGAGCCTTTGGGTTTTTATAGACTAAGAAGAGTTGTGATCATGTTTGTTTCTAAAGCTACACCTGAGTGTGATACCTGAGATAAGACAGGCCCTGCGCACTGAGAAAACATCTGGAAACCTCTGCACCCACTCGCAACAGGGTGTCAACCCACTGAAATGTCAAGCTGTCCTCTTGGAGAGGACGTTCCTTGACATCAACATGGCTGCAATTACCCTGCTGTACTGATTTCAGTATCAATACGACAATAATCGCTCTATTTTGATTTGCCATTTTTCCAGATTGAATGAAAGTTTAGAATTGAAGGCCATGGCCTGGAATAAGAGCCCCCCAGCCAGCAGAACATTTCTCTCACATCTCACATTACTAAGGgggtttaaaaacacacacctgAGAAAAGACGCATCTGTAGATCTGCAGCTCCTCTATGCAGGACACTGAGATCAGTTTTCTACTGCAGTAACCTTTGGCAGCCCGGACATTTTCCAAGTCTTTGTTACAGTGTTGGATAGACTAGAGTATCTGAGGGATGTTGTCAACCGCTGAAGAATAATAAGTGTTATCATCCCTTCATCCCCTGCATTCAGAAAAACATGgtcaaaagctttaaaaaaacaataaagagaaaCTTGGAGAAATACACCTGGGCATCTCAACAGGGatagagaagaagaaaaggccCCTGTCCAGCCATCTCTCCAGGGCTTGATCAAAAGTGTATTCATTTCATAGATGGTCTTTGGTGCGGGGGCGCAGCTCAACCCCTCTCCCCTGGGGAGGCCAGTTCCATCACAGCTCCTCCCCCGCCAGGTACTCGCCCGGCTCCCGCACCAGCAGCAAGTGCGCGTTCATCAGGgtgtcctcttcctcctcctcctcctcctcagtctTTACCCGCTTCACCATACCCATGTGGTCAAAGGGTAGCGGCAGGGGCGCGATGGGCACGGGTGGAGGGGCGCGGTAGGCCGCGTGCAGCTCCACGCTCTCCGGCGCCCGCTGCGTCCTCCTGCGCTCGGGGTCTTCCTGCTGCCGGTGCGTCTTCATGTGGGCGTTGCGGCTCTTGATTTTGAAGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1009 True 4033 lncRNA 0.34 1 5330726 5334758

Neighbor

gene id symbol gene type direction distance location
AMCG00003479 NA coding downstream 105255 5190549 ~ 5225471 (-)
AMCG00003477 NA coding downstream 176131 4879820 ~ 5154595 (-)
AMCG00003471 NA coding downstream 765166 4562401 ~ 4565560 (-)
AMCG00003472 NA coding downstream 777492 4547613 ~ 4553234 (-)
AMCG00003470 NA coding downstream 807728 4521548 ~ 4522998 (-)
AMCG00003482 NA coding upstream 22828 5357586 ~ 5358050 (-)
AMCG00003483 NA coding upstream 26329 5361087 ~ 5373418 (-)
AMCG00003486 NA coding upstream 74040 5408798 ~ 5413661 (-)
AMCG00003488 kbtbd11 coding upstream 218723 5553481 ~ 5555742 (-)
AMCG00003489 NA coding upstream 298704 5633462 ~ 5733437 (-)
G844 NA non-coding downstream 952 5329572 ~ 5329774 (-)
G811 NA non-coding downstream 190481 5132700 ~ 5140245 (-)
G804 NA non-coding downstream 199025 5131467 ~ 5131701 (-)
G786 NA non-coding downstream 348506 4982019 ~ 4982220 (-)
G777 NA non-coding downstream 547350 4779846 ~ 4783376 (-)
G862 NA non-coding upstream 5703 5340461 ~ 5341987 (-)
G942 NA non-coding upstream 417319 5752077 ~ 5755468 (-)
G946 NA non-coding upstream 453310 5788068 ~ 5788321 (-)
G961 NA non-coding upstream 494689 5829447 ~ 5829749 (-)
G982 NA non-coding upstream 620346 5955104 ~ 5955319 (-)
AMCG00003476 NA other downstream 521737 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 1435202 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 1791759 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 1900454 3394657 ~ 3430272 (-)
AMCG00003422 NA other downstream 2891905 2427397 ~ 2438821 (-)
AMCG00003484 NA other upstream 9312 5344070 ~ 5356468 (-)
AMCG00003550 NA other upstream 3674359 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 4518441 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 4539912 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 5290588 10625346 ~ 10633112 (-)

Expression


Co-expression Network