AMCG00003534 (id2,LOC106566577)


Basic Information

Item Value
gene id AMCG00003534
gene name id2,LOC106566577
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8649125 ~ 8652470 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003534
ATCGGGGGGGACGCAGCACAGGAAGACAACAACACCCGCATCTCCGCTCTCGTCCGAAGTGAAAACATGAAAGCAATAAGCCCGGTGCGCTCTTTCCGGAAAAACAGCGGCAACTTTCCCGAGCACAGCCTGGGGATCTCCCGCAGCAAAACCCCCGTGGATGATCCTTTAAGTCTCCTCTACAACATGAACGACTGCTACTCCAAGCTGAAGGAGCTCGTCCCCAGCATCCCGCAGAACAAGAAGGTGAGCAAGATGGAAATCCTGCAGCATGTCATCGATTACATCCTGGACCTGCAGATCGCACTGGACTCGCACTCCGCCATGGCCAGCCTGCACCACCAGCGGCCAGGGCAAGCGCCGGCCAGGACCCCCCTGACGGCTCTCAACACAGACATCAGCATCCTCTCCTTACAGTCGGCTGAATTCCCAACAGAGTTAATGACAGATGACCGCAAGACGCTCTTTCGCTGAACTGGCTCGTTATAATATTCCCAAGAGTGGGAGCTGAAAGGAAAGAGGATCATCGCAAGGAATCGCCCATCAGAAGTCTTTGCCTTTTTTTGCAAAGGTGGAGCGTGAATAGAAGACAACTGGGTTAGTTGCTTTATAAAGTTTAGTCTGTCTTGTCAGAATGGTTACTTTTTTGGCACGTTAAGGACTGGACGTcgtgaaaaactaaaaacctaaaaaaaaaaaaaaaaaacccctaaaaaaaaaacaaaaaaaaaaaaacgtttgcGTGAAACCTTGTGAACTCTGTAATTGGAGTTGATCTTGTATAGTTGCAGAGATTGTACATTTCTGCAGACGATGTAATGCTGTACTTAATTATGCTGAAACTTTTTATAAAAGTAATATTGTAAATTGTAccttttttatacaaaataaatcaaatgctttatttgaatgtgtctcCCCTTAGCTTTGGTACCTTTTCTCTGTGGATGGATTCACACCCAGGATATGATCGCATGACTAGCCACATTTGTTGATggtttttttaaattcctgtaAGAGTGTACTGTGTTAAACtagtttgtttcattgtttgtttcaattgtgTAAATGTCTCTCTTAATATATGCCATACACGCACGAAACGCCCAATCACTTCTAACATGTGAAATATACAAAGTGACAATGTTTATGGAGATCTATTGCTGTCTGGAAACTGTTCTATGTAATAAACCTACATCTCAGTGGGTACTGCTAGAGTAAATTATGCCTCAGGATTTGTAGCATCTGACCCCCTTATCTCCCAGAACAAAAATGTAGTTAAAGTATACCTCAAAAGGGTGCATCTATATTTCCTAAACCAGTGCAAAGGTAtttcctggggggggggggggtgaatagttctTGAACCCTGAGCACATTTTCCCCGTTGGTTTATTACAATGAAATGGTCTTGTGCTCCAATTGTTAATTCAGCACTATAAAGTCGAGCAGGTGATCATAATAAAACCCATTCCCACTTAACTCCTTTCGATGGTTCTGGTATACTTGCGTAAGGATGCCGATAATGAAACTGGGCGCCAGCAATAGTTGCGTCGCACGTCGCATTCACGCAATCCTGCGCCATCCGGGCTGCAGCGCAGATGTGCccagttctgcgcggctccaccaatgggctCGATGCGGCCGCGCAGATCTGCGTCCATCTGCGCTGCAAGGACGCCAGCGGGGTGCCATTCCCTGCCCTTGCCACGGCTGGCTTTATCCGCAGGGAGAGCTCTCTGGTCCTCTACCATCAACCTCACCCCCACAAACTGCACCAAACAAACCGGCACTGGCAACTACTGGAAAACCCAGTGGAAACCCCAAACCATCCAGCCATGCCTGTGGCTCTTATCCAATGCGtcttcagtttcagtttatGTTAAAGGTCCCTTTGTGCAAAACTAGTCCTTCTCAGGTTtggaccaaaacaaaatgtaaacccaACAAGATGATAAAGTGAGGTCTGAAATCTTGCGTTCAGCAGCCCATAACCGCTCATCTGTAGCATTTGGAGGGACGGATAAAACGCAGGGTGAATGGCGCCCCCTAACTAACCCACACACAGTTGTGCTGTACATGAGCCAGAccaataaaaaagaacaaacatcatgtattcatttattttgtatttaactgGATTCCCCTAATTCAAATCAGTCAAACTCTTTAAAACAGTTGATAAAAACCCATGTGTGTCAATGAGAAGTCAATAACATTCATATCACTGATTAACTGGCATTGCTTCACGTTGTTTTAATACCTATTTAGATCAAAGTGCCCATAAAAATACCAAACACTAAAACGGATGATTCCAGTGTATTCTTGagtactgtatttgtt
>TU1569
GACAGCCGGCTGCTTCAGTCCGTACACTAACAATCGGGGGGGACGCAGCACAGGAAGACAACAACACCCGCATCTCCGCTCTCGTCCGAAGTGAAAACATGAAAGCAATAAGCCCGGTGCGCTCTTTCCGGAAAAACAGCGGCAACTTTCCCGAGCACAGCCTGGGGATCTCCCGCAGCAAAACCCCCGTGGATGATCCTTTAAGTCTCCTCTACAACATGAACGACTGCTACTCCAAGCTGAAGGAGCTCGTCCCCAGCATCCCGCAGAACAAGAAGGTGAGCAAGATGGAAATCCTGCAGCATGTCATCGATTACATCCTGGACCTGCAGATCGCACTGGACTCGCACTCCGCCATGGCCAGCCTGCACCACCAGCGGCCAGGGCAAGCGCCGGCCAGGACCCCCCTGACGGCTCTCAACACAGACATCAGCATCCTCTCCTTACAGTCGGCTGAATTCCCAACAGAGTTAATGACAGATGACCGCAAGACGCTCTTTCGCTGAACTGGTGTTTGATTTAAACCCAAAAACACGGGACctgggaactttttttttttttttttttttctctccacccccccaaccaccccccaccccccctttccCCGGTCTggatttttcaattaaatcaagaaaGAGACTTTGCTCAAAGGATGATTGCATTGTTGTATCAGCTCGGACATTCATAGTTATTTATCAAtagactttttcttttttcttttgtcttgtCCTTTCTTCAAACGGAAGGCTCGTTATAATATTCCCAAGAGTGGGAGCTGAAAGGAAAGAGGATCATCGCAAGGAATCGCCCATCAGAAGTCTTTGCCTTTTTTTGCAAAGGTGGAGCGTGAATAGAAGACAACTGGGTTAGTTGCTTTATAAAGTTTAGTCTGTCTTGTCAGAATGGTTACTTTTTTGGCACGTTAAGGACTGGACGTcgtgaaaaactaaaaacctaaaaaaaaaaaaaaaaaacccctaaaaaaaaaacaaaaaaaaaaaaacgtttgcGTGAAACCTTGTGAACTCTGTAATTGGAGTTGATCTTGTATAGTTGCAGAGATTGTACATTTCTGCAGACGATGTAATGCTGTACTTAATTATGCTGAAACTTTTTATAAAAGTAATATTGTAAATTGTAccttttttatacaaaataaatcaaatgctttatttgaatgtgtctcCCCTTAGCTTTGGTACCTTTTCTCTGTGGATGGATTCACACCCAGGATATGATCGCATGACTAGCCACATTTGTTGATggtttttttaaattcctgtaAGAGTGTACTGTGTTAAACtagtttgtttcattgtttgtttcaattgtgTAAATGTCTCTCTTAATATATGCCATACACGCACGAAACGCCCAATCACTTCTAACATGTGAAATATACAAAGTGACAATGTTTATGGAGATCTATTGCTGTCTGGAAACTGTTCTATGTAATAAACCTACATCTCAGTGGGTACTGCTAGAGTAAATTATGCCTCAGGATTTGTAGCATCTGACCCCCTTATCTCCCAGAACAAAAATGTAGTTAAAGTATACCTCAAAAGGGTGCATCTATATTTCCTAAACCAGTGCAAAGGTAtttcctggggggggggggggtgaatagttctTGAACCCTGAGCACATTTTCCCCGTTGGTTTATTACAATGAAATGGTCTTGTGCTCCAATTGTTAATTCAGCACTATAAAGTCGAGCAGGTGATCATAATAAAACCCATTCCCACTTAACTCCTTTCGATGGTTCTGGTATACTTGCGTAAGGATGCCGATAATGAAACTGGGCGCCAGCAATAGTTGCGTCGCACGTCGCATTCACGCAATCCTGCGCCATCCGGGCTGCAGCGCAGATGTGCccagttctgcgcggctccaccaatgggctCGATGCGGCCGCGCAGATCTGCGTCCATCTGCGCTGCAAGGACGCCAGCGGGGTGCCATTCCCTGCCCTTGCCACGGCTGGCTTTATCCGCAGGGAGAGCTCTCTGGTCCTCTACCATCAACCTCACCCCCACAAACTGCACCAAACAAACCGGCACTGGCAACTACTGGAAAACCCAGTGGAAACCCCAAACCATCCAGCCATGCCTGTGGCTCTTATCCAATGCGtcttcagtttcagtttatGTTAAAGGTCCCTTTGTGCAAAACTAGTCCTTCTCAGGTTtggaccaaaacaaaatgtaaacccaACAAGATGATAAAGTGAGGTCTGAAATCTTGCGTTCAGCAGCCCATAACCGCTCATCTGTAGCATTTGGAGGGACGGATAAAACGCAGGGTGAATGGCGCCCCCTAACTAACCCACACACAGTTGTGCTGTACATGAGCCAGAccaataaaaaagaacaaacatcatgtattcatttattttgtatttaactgGATTCCCCTAATTCAAATCAGTCAAACTCTTTAAAACAGTTGATAAAAACCCATGTGTGTCAATGAGAAGTCAATAACATTCATATCACTGATTAACTGGCATTGCTTCACGTTGTTTTAATACCTATTTAGATCAAA

Function

symbol description
id2 Enables transmembrane transporter binding activity. Involved in negative regulation of DNA-binding transcription factor activity; negative regulation of transcription, DNA-templated; and regulation of G1/S transition of mitotic cell cycle. Located in cytosol and nucleus. Colocalizes with cytoplasm.

NR:

description
DNA-binding protein inhibitor ID-2

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003534 False 2343 mRNA 0.45 3 8649157 8652470
TU1569 True 2548 TUCP 0.48 3 8649125 8652404

Neighbor

gene id symbol gene type direction distance location
AMCG00003533 rnf144a,rnf144aa,LOC107752753,LOC106610698 coding upstream 311475 8317038 ~ 8337650 (+)
AMCG00003532 rsad2 coding upstream 356907 8284827 ~ 8292218 (+)
AMCG00003530 LOC108258189,LOC103368564,LOC106533618 coding upstream 668928 7978775 ~ 7980197 (+)
AMCG00003526 NA coding upstream 1101571 7532553 ~ 7547554 (+)
AMCG00003525 NA coding upstream 1118000 7518051 ~ 7531125 (+)
AMCG00003535 NA coding downstream 166942 8819412 ~ 8842419 (+)
AMCG00003542 itgb1bp1 coding downstream 305671 8958141 ~ 8959534 (+)
AMCG00003539 cpsf3 coding downstream 313241 8965711 ~ 8977843 (+)
AMCG00003540 NA coding downstream 327130 8979600 ~ 8982021 (+)
AMCG00003545 grhl1 coding downstream 457371 9109841 ~ 9131160 (+)
G1303 NA non-coding upstream 205101 8443740 ~ 8444024 (+)
G1291 NA non-coding upstream 308533 8340266 ~ 8340592 (+)
G1271 NA non-coding upstream 372142 8275762 ~ 8276983 (+)
G1253 NA non-coding upstream 852271 7796451 ~ 7796854 (+)
G1241 NA non-coding upstream 898660 7523861 ~ 7750465 (+)
G1343 NA non-coding downstream 8562 8661032 ~ 8666927 (+)
G1347 NA non-coding downstream 46996 8699466 ~ 8700554 (+)
G1375 NA non-coding downstream 191357 8843827 ~ 8844082 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding downstream 356827 9009297 ~ 9027632 (+)
G1574 NA non-coding downstream 1048087 9700557 ~ 9703478 (+)
AMCG00003524 rps7,LOC107668222 other upstream 1145110 7498040 ~ 7504015 (+)
G1012 NA other upstream 2154220 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 3314373 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 4126725 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 4193983 4452564 ~ 4455142 (+)
AMCG00003541 asap2,LOC106566627 other downstream 247986 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 423420 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 603358 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 1125038 9777508 ~ 9781756 (+)
AMCG00003604 NA other downstream 2809193 11461663 ~ 11482931 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011584 id2a coding NC_007128.7 CM002901.2 34805897 ~ 34808165 (+)