Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00003542 |
| gene name | itgb1bp1 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 8958141 ~ 8959534 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| itgb1bp1 | Predicted to act upstream of or within integrin-mediated signaling pathway. Orthologous to human ITGB1BP1 (integrin subunit beta 1 binding protein 1). |
| description |
|---|
| PREDICTED: integrin beta-1-binding protein 1 |
| id | name | namespace |
|---|---|---|
| GO:0007229 | integrin-mediated signaling pathway | biological_process |
| id | description |
|---|---|
| K20058 | ITGB1BP1; integrin beta-1-binding protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00003542 | True | 372 | mRNA | 0.51 | 4 | 8958141 | 8959534 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00003535 | NA | coding | upstream | 115722 | 8819412 ~ 8842419 (+) |
| AMCG00003533 | rnf144a,rnf144aa,LOC107752753,LOC106610698 | coding | upstream | 620491 | 8317038 ~ 8337650 (+) |
| AMCG00003532 | rsad2 | coding | upstream | 665923 | 8284827 ~ 8292218 (+) |
| AMCG00003530 | LOC108258189,LOC103368564,LOC106533618 | coding | upstream | 977944 | 7978775 ~ 7980197 (+) |
| AMCG00003526 | NA | coding | upstream | 1410587 | 7532553 ~ 7547554 (+) |
| AMCG00003539 | cpsf3 | coding | downstream | 6177 | 8965711 ~ 8977843 (+) |
| AMCG00003540 | NA | coding | downstream | 20066 | 8979600 ~ 8982021 (+) |
| AMCG00003545 | grhl1 | coding | downstream | 150307 | 9109841 ~ 9131160 (+) |
| AMCG00003543 | NA | coding | downstream | 181010 | 9140544 ~ 9144958 (+) |
| AMCG00003546 | rrm2,LOC107668265 | coding | downstream | 206152 | 9165686 ~ 9168941 (+) |
| G1375 | NA | non-coding | upstream | 114059 | 8843827 ~ 8844082 (+) |
| G1347 | NA | non-coding | upstream | 257587 | 8699466 ~ 8700554 (+) |
| G1343 | NA | non-coding | upstream | 291214 | 8661032 ~ 8666927 (+) |
| G1303 | NA | non-coding | upstream | 514117 | 8443740 ~ 8444024 (+) |
| G1291 | NA | non-coding | upstream | 617549 | 8340266 ~ 8340592 (+) |
| G1430 | ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 | non-coding | downstream | 49763 | 9009297 ~ 9027632 (+) |
| G1574 | NA | non-coding | downstream | 741023 | 9700557 ~ 9703478 (+) |
| G1706 | NA | non-coding | downstream | 1277322 | 10236856 ~ 10238261 (+) |
| G1747 | ralgapa2 | non-coding | downstream | 1472130 | 10431664 ~ 10457765 (+) |
| G1855 | NA | non-coding | downstream | 2090617 | 11050151 ~ 11050644 (+) |
| AMCG00003541 | asap2,LOC106566627 | other | upstream | 16390 | 8900456 ~ 8941751 (+) |
| AMCG00003534 | id2,LOC106566577 | other | upstream | 305671 | 8649125 ~ 8652470 (+) |
| AMCG00003524 | rps7,LOC107668222 | other | upstream | 1454126 | 7498040 ~ 7504015 (+) |
| G1012 | NA | other | upstream | 2463236 | 6487692 ~ 6494905 (+) |
| AMCG00003480 | NA | other | upstream | 3623389 | 5303450 ~ 5334752 (+) |
| AMCG00003544 | NA | other | downstream | 116356 | 9075890 ~ 9106765 (+) |
| AMCG00003551 | NA | other | downstream | 296294 | 9255828 ~ 9263468 (+) |
| AMCG00003570 | NA | other | downstream | 817974 | 9777508 ~ 9781756 (+) |
| AMCG00003604 | NA | other | downstream | 2502129 | 11461663 ~ 11482931 (+) |
| AMCG00003606 | NA | other | downstream | 2530651 | 11490185 ~ 11491597 (+) |
