AMCG00003655 (xdh)


Basic Information

Item Value
gene id AMCG00003655
gene name xdh
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13155060 ~ 13206839 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003655
ATGGATGTTGGCATCAGTCTGAACCCAGCGATCGACATTGGGCAGGTGGAAGGTGCATTCATGCAGGGGGTGGGTCTGTTCACCTTGGAGGAGCTGCGCTACTCTCCTGAGGGAGTCTTGTACACCAAGGGCCCCGGCATGTACAAGATCCCTGGCTTTGGAGACATCCCCACCAAGCTCCGAGAAGGCAGGGCTCACCTTGGAGGAGTAGATGGCCTTGGCGTTGGGTGCGTCTCGGAGGAGGGACACTCGGAGCTTGGTAGGGATGTCTCCAAAGCCAGGGATCTTGTACATGCCGGGGCCCCTGGTGTACAAGACTCCCTCAGGAGAGTAGCGCAGCTCCTCCAAGCTCCAGAAGCCTTCCAGGTGCCCCCAGAAATGGAAGAGCATGTGGAGATCCAAGTCCCAGAGACAGGTCCTAGGAGATCCCACAGACCGAATCAAGTCAATGCCAATCTTGTCAAAATGCCAATGCTATGA
>TU2754
actgtattttaattgtactttgtCTTGATTGTTGATGTTTCAGGACCCCTGACCTTGGCTATGactttgaaaaaaatgaaggaagaccctttcattatttcagttatGGGGTGGCCTGTTCTGAGGTTGAAATCGATTGCCTGACTGGGGATCAGAAGAACCTTTGTACCACCATAGTTATGGATGTTGGCATCAGTCTGAACCCAGCGATCGACATTGGGCAGGTGGAAGGTGCATTCATGCAGGGGGTGGGTCTGTTCACCTTGGAGGAGCTGCGCTACTCTCCTGAGGGAGTCTTGTACACCAAGGGCCCCGGCATGTACAAGATCCCTGGCTTTGGA

Function

symbol description
xdh Predicted to enable xanthine dehydrogenase activity. Predicted to be involved in xanthine catabolic process. Predicted to be located in peroxisome. Predicted to be active in extracellular space. Is expressed in neural crest cell and xanthoblast. Human ortholog(s) of this gene implicated in several diseases, including Lesch-Nyhan syndrome; cardiovascular system disease (multiple); chronic kidney disease; hyperuricemia; and xanthinuria. Orthologous to human XDH (xanthine dehydrogenase).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003655 True 480 mRNA 0.57 5 13156234 13206839
TU2754 False 341 TUCP 0.48 3 13155060 13156627

Neighbor

gene id symbol gene type direction distance location
AMCG00003653 NA coding upstream 62966 13091093 ~ 13092094 (+)
AMCG00003647 NA coding upstream 99879 13053429 ~ 13055181 (+)
AMCG00003649 ccdc28a coding upstream 130821 13020377 ~ 13024239 (+)
AMCG00003641 NA coding upstream 229004 12918837 ~ 12926056 (+)
AMCG00003642 NA coding upstream 253102 12891168 ~ 12901958 (+)
AMCG00003654 cnih4,LOC106584110 coding downstream 35212 13242051 ~ 13246855 (+)
AMCG00003656 NA coding downstream 113364 13320203 ~ 13325222 (+)
AMCG00003666 NA coding downstream 530763 13737602 ~ 13744368 (+)
AMCG00003668 NA coding downstream 590440 13797279 ~ 13797599 (+)
AMCG00003670 esrrga,LOC107582200,LOC107733169 coding downstream 802632 14009471 ~ 14013046 (+)
G2267 NA non-coding upstream 52394 13102457 ~ 13102666 (+)
G2264 NA non-coding upstream 53744 13098561 ~ 13101316 (+)
G2250 NA non-coding upstream 75039 13074688 ~ 13080021 (+)
G2139 NA non-coding upstream 767002 12387603 ~ 12388058 (+)
G2125 NA non-coding upstream 895417 12220322 ~ 12259643 (+)
G2281 NA non-coding downstream 20396 13227235 ~ 13228357 (+)
G2294 NA non-coding downstream 40470 13247309 ~ 13254443 (+)
G2323 NA non-coding downstream 208092 13414931 ~ 13415156 (+)
G2326 NA non-coding downstream 278753 13485592 ~ 13485807 (+)
G2329 NA non-coding downstream 301048 13507887 ~ 13509930 (+)
AMCG00003648 LOC106571761 other upstream 112463 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 238058 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 1425069 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 1577731 11573731 ~ 11577329 (+)
AMCG00003606 NA other upstream 1663463 11490185 ~ 11491597 (+)
G2440 NA other downstream 1211677 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 1644913 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 2094241 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 2818032 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 3825731 17032570 ~ 17042594 (+)

Expression


Co-expression Network