AMCG00003680


Basic Information

Item Value
gene id AMCG00003680
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14385138 ~ 14388550 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003680
atgtgtatgtataatgaGATGGAAGATATTAAAACTGCAAAGATTGCATATagcatAACCACAGGGATCATTGCCATTCTTGTATCCAGAAACctaacaaatggaaaaatgCACGTTGGCCTGCTGATCTCGTCCTCCCTCAATGCGCTGCTGTCCATGGCCTGCTGTGTGGGCCTCCTCCTGGCCATCTCCCTGACCATCTATGGGGGTGGCGGCAACCTAATGCTGGGCTGCAACTCCACCATGCTTCCAGTGGACGCCAAAGCCTCTAGCATGGACTGCCCCTTCGACACCACGCGCCTCTATGACACAACGCTGGCACTATGGTTTCCCTGTGTTGTGATGGCTGCTGTGGAGGCGGGTCTTTCTGTGTGGTGCTTCGTGATTGGACTGATCCTCAGCGGCAAGGGGCCGTGTGGCCAGAACTACATCAGAGATCAGCTGGAGGAGCAGGCAAACGCAGCCAGCGAAGGGAGACGCCCAGAATTGATTCCACAGAGATATCAGCTAGTCGATCATCATCTTGGATACGCATAAAGCAGAGgCCCTTTTATGAAGGAAATTAAGCAAAACAGAAGATGATTTGAAGTGACCACACTCCAGGACCGGGACTGCAAGGGTTTAGTGAAATGATACCATCCAAAACTTTTCATATTGTTAACTTATCTTTCCTTTCACTGACCCTTTCAGCTCTTCAGCTGGACCTGTGCCTTAAGCCCAGACTTCTATTATGACAGAAACAATTGTTGGATGCTGTTTTAAAGCTTCCCTGCAAATATCTCTTGAATTTGAAGTCCGAAAGGGTGTGAAAGAAATGGGaatttgtctcttttttttttttttttgcataatctTGTTTTGTTGCACAGAGCTGTGCTTTATGCAAATCTGAAATTCTTGTTAATCACATGAAGGAAACGTTATATAACCACaaagaaaatgtagtttgcACCAAATAAGGATGACTTGAAACTGTACCACAATATAGGCAATATACTAGCTATGGGATCTCTgacatcaattttttttttttatatttaaatattgtccATGGTTGTCTGACTTCACTCTTTGTTCACAAGTGTAGTCTATCCCCTACATGTGTAGAAGATAAGAATGCAAGACTGAAGAAATCTGCCTGCCTGTTGCAGATGAATGCAGCTGCCACTGTAACTTCAGGGAACTTTATTTAAGGATTCAAAAAGTCACAGCAGGGATTGAGGTGACCATGTGAATTTACTGCACACTGAAGGTTTGAAGACTGACTACAAATACAtctaaataatgcaaatgtgaaCAGTACTTTAGTCAgaatataaacttttattttttccttatggAACATATTGTGATTATGCGCTGAAATattcacacaaaatataatCAGTTGACTGAACTGTAGATAGATCACTTCTTTATCTTAAAGCCAAACTTCTTTGTCGGCTCAGCTGAACTCAATACAGTCTACAAttggagaaaacaaatattgacttGAAGTGATTTAAAGGTCTCATTCAAAACAAACCTCAAAAGCATTGTCAGTTAGGTTTCCCCATGATTTACTTAACTCCTTTATTGTATATCAGTAGAATCATTCCTTCCTTGAAGACCAAAGACTTTAACTACATCACTTGAAGCCACTATACATTATATCTGAATTAaccactgtttttgttttgcaataatttaaattgatgaAAAAGGTAATTGATGTAGATTactgtttttgtaatgctttcaagaataaagtgttttttattatttgttgtaaaGTTACTCATTACAGCAGTATGGATGCTATTGTCAGGTTACAGACAGTCCTCAATCTTTAATTACTAGACTTTATGTAAAACCTGACTACAGATGTTAGAGAGGTTGAAATCATgctgaaaatatttacaaaataagattGAAAAGATCCACATAGATTTGATCTGTTTTGGTCTCTTTGAAATAGATCATATGCTAATTGGTTAACCAACATCATCAATGGGCTACAGTCCACTGGATTTAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003680 True 2017 mRNA 0.39 6 14385138 14388550

Neighbor

gene id symbol gene type direction distance location
AMCG00003679 nrbp1,LOC103372645 coding upstream 2546 14366316 ~ 14382592 (+)
AMCG00003674 NA coding upstream 49469 14329530 ~ 14335669 (+)
AMCG00003672 NA coding upstream 56453 14299567 ~ 14328685 (+)
AMCG00003671 NA coding upstream 92375 14233934 ~ 14292763 (+)
AMCG00003676 NA coding upstream 162234 14220132 ~ 14222904 (+)
AMCG00003678 LOC108270052,LOC107665105,LOC107729283,LOC108428681,LOC107589599 coding downstream 19879 14408429 ~ 14416083 (+)
AMCG00003683 NA coding downstream 151994 14540544 ~ 14548128 (+)
AMCG00003681 NA coding downstream 167440 14555990 ~ 14558193 (+)
AMCG00003682 NA coding downstream 175978 14564528 ~ 14580910 (+)
AMCG00003688 NA coding downstream 219436 14607986 ~ 14617192 (+)
G2380 NA non-coding upstream 305811 14079112 ~ 14079327 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 843984 13539972 ~ 13541154 (+)
G2334 NA non-coding upstream 870073 13514660 ~ 13515065 (+)
G2333 NA non-coding upstream 872140 13512600 ~ 13512998 (+)
G2332 NA non-coding upstream 872607 13512194 ~ 13512531 (+)
G2446 NA non-coding downstream 32181 14420731 ~ 14421310 (+)
G2517 NA non-coding downstream 617796 15006346 ~ 15030368 (+)
G2563 NA non-coding downstream 726079 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 727155 15115705 ~ 15116972 (+)
G2571 NA non-coding downstream 740046 15128596 ~ 15130200 (+)
AMCG00003655 xdh other upstream 1178299 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 1342541 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 1468136 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 2655147 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 2807809 11573731 ~ 11577329 (+)
G2440 NA other downstream 29966 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 463202 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 912530 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 1636321 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 2644020 17032570 ~ 17042594 (+)

Expression


Co-expression Network