AMCG00003679 (nrbp1,LOC103372645)


Basic Information

Item Value
gene id AMCG00003679
gene name nrbp1,LOC103372645
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14366316 ~ 14382592 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003679
CTCACGCCGTGTGTAAGAAAACAGTGTACGCCGTGATGAAGTTAGTGAGTGAATGTCGTTCCTCTCTGCGTTTCCCGGCGCCATTATCAGACTTGGTAGGCGTTGTTATTATTAGCCGAAAGCCATATTAAAACAGTGGTTATGGGAAATTATTTTCTCGCTACTGAGTCGTGGGTAGAACAGCTTTGTGAGTCTAGACGCGCCGCAGTTTGTAGTGGTGGTTTATCTGCCGAGTGCATGAGATCGCTCCGCACCAACTGATGGACCGCATAGGATTTAGGTAGTTGTCACATTTTGTGTTACTTGAAAGCCATCAGCTGATCCAGTTTGCAGCCTCGGCGCTCCTGAAGCTCTGGACCGGACGTCTCCTGCTAACTGAGTCGCAAGcaacgtgtgtgtgttgttttgtcatTATTAGACATTGGCACAATTATTACCGGGGTCTGTGTCTCCTCTTCCTTGCGCGTCATCGCAGCTGACTTGACAGCCTCTACGTCATCGCCTGCGTTGAGAGACGGGCACCGTACCCGGGCTCACCCAGCCTGACCCTTAAGCATAAgCGCACTCGCCCAGAACAGGGTTGTGTGAGACCCAGGATCCTTTGAGGAGGCATGTCTGAGGGAGACGGGAAGTCTGGTCCAGCCTCTGGGATGGAGGGGAAGCCGGAGTCCATGTCTACCACACAGGGAGTCTCCTCCATGTCCCCCCCGGTGTCGGCTGTGGCCCAGGGTCCGCCAGCTACTGAAGATGAGGAAGAAGAGAGCGAGGATGAGTCAGAGATCCTGGAGGAAAGCCCCTGTGGACGGTGGCAGAAACGGAGGGAGGAGGTGAATCAGCGTAATGTACCTGGCATCGACAGTGCCTACCTAGCCATGGACACCGAGGAGGGAGTGGAAGTGGTGTGGAATGAGGTCATGTTCTCCGAGAGGAAGAACTTCAAACTACAAGAGGAGAAGGTCAAAGCAGTTTTTGATAACTTGATCCAGCTGGAGCACCTGAATATTGTCAAATTCCACAAGTATTGGGCAGATGTAAAAGAAAACCGGGCCAGAGTCATTTTCATCACCGAATATATGTCTTCAGGAAGCTTGAAGCAGTTTctgaagaagacaaagaaaaatcaTAAGACTATGAATGAGAAGGCTTGGAAGCGGTGGTGCACTCAGATCCTGTCAGCTCTCAGCTACCTCCACTCATGTGACCCCCCGATCATCCATGGCAACCTCACCTGTGACACAATCTTCATCCAGCACAATGGGCTCATCAAAATCGGCTCAGTGGCTCCTGATACGATCAATAATCATGTCAAAACTTGTCGAGAAGAACAGAAGAACTTGCACTTTTTTGCACCGGAATATGGAGCGGTCGCAGATGTCACGACAGCTGTTGATATATATTCTTTTGGAATGTGCGCCTTGGAGATGGCTGTTCTCGAAATCCAGAGCAACGGGGAGTCTTCATACGTATCGCAGGAAGCTATAAACAATGCCATTCTGTCCCTAGAGGATACCTTGCAaagaGAGTTCATTCAGAAGTGTCTGGAGGCGGACCCATTCCGACGGCCCACGGCCAAGGAGCTGCTCTTTCACCAGGCCTTGTTCGAAGTGCCCTTGCTGAAGCTCCTGGCCGCTCACTGCATCGTCAGCCATCAGCATATGATTCCTGAAAACGCTTTAGAAGAAATTACCAAAAACATGGACCCAAACCTGGTGATCGCTGAGACCAAGGATCGGGTGCAGCTAAAGCTTTCTCAATTTCCTGCACTTGAGCTGGATAAGTTCTTAGAAGATGTCAGGAATGGGATCTACCCGCTCACGGCGTTTGGCATGCCCTGTccccagcagccccagcaggAAGCGGTGAAATCCCCCATCGTTCCCCCCTCTGTCAAGACTCCCACCCCAGAGCCGGCAGAACTGGAGATGAGGAAGGTTCTTCAAATGCAGTGTAATATCGAGCCAGTGGAAGAAGGAGCTAAACACCATCTAACATTGTTATTAAAACTGGAAGACAAGCTAAACCGGCATCTTAGCTGTGACTTGTTGCCCAATGAGAATGTGCAGGAGCTGGCGGTGGAGCTGGTTCAGCTAGGATTCATTAGCGAGGTGGATCAGACCCGACTCACTTCTGTTCTCGAAGAGGCCTTTACAAAGTTCTACAACCGCAACGGCTCCCTCAACCCCGTGACCGTGTCCTCATAGCGACCTGCCGCCGCCACGGACAGCAGCCTCCACGATCCACAGCCCTCCCTCGCAGCACAGGACTTCATATCGCAGCGACAAAGCATCTTTTGAAACCCCGAAAGTGACTTAGAAGGATACCTTGTGATCCCGATGATCGAACCGAGGGGGGGGCGGGGCTGTGGCTCCTGTTTCAGTGTAGCGTCTGCTTGTATATTTAAGACACAATCGTCAGTATTACCATCTGTATTTGAACCTCTCTGATCTACCTGTATTGCAGGATCATGCTGTATGTAATACACGTCTACACGAGCACATTCTCttgctctttattttttattctcttgcCAACAAAGTGCATGGTCTTgcgtttgtatttttttttcttaaaatggaTGAGGTGTGTAATCTGGTTttgtgggttttattttgtttagtctaccattttgtttttcctatttttccaCAAGATTTCACTCGCCAGTTCCACCTTTGttgacacatttgttttgtttttccttcagcaCTGTCATGTAATAAAGATTTTCCTGTAGtactttttttaaggtgaaaGCAAAGTTGaccatttttctttccacaaaaGCCACTGGACTTGTCCCGTTGAGTCTGAGCCAGCACtggggaaagtgtgtgtgtttgtgtgggggttggggggtgatCAATTAGTTTAGAGAAGAGATAGTAGGGAAGTAGTCTGTTACAAAAACTCCCCATATTCTCTGGTTGACTTTCGATTCAATGGGGCTGCTCTTTTGTTGAATGTCTGCATCTTCTCAGAGCCATTTCAAATCCTGCTCAAGTGTGTCGCTATGGGGAGGCCTATGAGCAAAACACGGCATAGGCAGGTTACTGTGAAAACGGGCCCTGCTGTCTGAACTGGCACGAGTGTCATCGTTTGATTGTAATGTACCGTACGATGGAAGGGCAGACCTAGAATTCAGTAAGGAAAACGCGGTGTGGAGGGGGATGTTGACGGAGTTGCTGTTCCCTTTCCCAGGAACTTGTTCCAGGGCCTGTTtccatattgtttgttttgctgggCGCATCTTGTAACTGCTTAAGCCAGACACAGCCgagtctatttatttttgtttcttgaagTGAATCTGAAACATACATCATCTTCAAACTGTGgtattgttttgtgtgatttttttatatattatgttaccTTGTTACCTGTGTACTTTATTAGTTGTTGAATTCAGATTGTGAAAGAGCTAAGTGCTCTGTGTCTAGGGTTCTTGGTCATTTTCCTCATCACAGGAATCTCTGAGAAGCCAGATTGAAATGTACAACAGCTTAGTGATGCTCTTGACCGAGACCAGCACTGAGACTGTGTGGGACGCAGGGCTCAATTTGGTAGAACTCTTGGCAGTGTGTGACAAGGACAAAGGCATCAATGTGTGGTTAGATGACTGAAAGATTTAACTAAAACCTGATACTGATGGAAGTCATAGTTAACTGCCAAAGCTATTCCTAACCGTTATCTAAATTGAAAATCAATTACAGAAcaatgggaaaaaatataacTTGTCTAGTCTtgtcaaatgtaatttttcctttatttgatacagaagacatttttatatttttattacatgaaGATTAGATAAAATAAAGTCAAGCTCAGACTGGCTCAAACTTCCACAACCAATCCTGGCATGGGCATACATTTCATATCATATACTGCCTGTTGAGCCAGGTGTAAAATGGTTCACTGTAACATACAGTACAATGTCCTTTATTCTCACGATTTACAGTGTTGAATGATACCAGATAATGCTCTATAAATAATGCCagtttgttttccctttctgGCAGCTGTTGATGCTTATTGAGGATGGATGCCCCTAAATATACGagtacaataaaatgtgaatttggctgctgaaatacatcaaaacaatgTTAGTCTTAAATGTGATACATTAACCACACCATACAATTGAGTAACgaaatcatacatttttgtagGTAGGACATGCTTATCTGCTATCCCTTAAGTTGCCTTGGGATTTATATAGGCATCTGTTTAATGGCGCATTCTTTACATTAGTAACATGCATTTTGGTGCAtgttatgaattaaaaacatttcaatgaaattcaaaaacgtaaaaaaaaatacacaaaaaaaaaacaata

Function

symbol description
nrbp1 Predicted to enable ATP binding activity and protein kinase activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intracellular signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and endomembrane system. Orthologous to human NRBP1 (nuclear receptor binding protein 1).

NR:

description
nuclear receptor-binding protein

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08875 NRBP; nuclear receptor-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003679 True 4348 mRNA 0.45 18 14366316 14382592

Neighbor

gene id symbol gene type direction distance location
AMCG00003674 NA coding upstream 30647 14329530 ~ 14335669 (+)
AMCG00003672 NA coding upstream 37631 14299567 ~ 14328685 (+)
AMCG00003671 NA coding upstream 73553 14233934 ~ 14292763 (+)
AMCG00003676 NA coding upstream 143412 14220132 ~ 14222904 (+)
AMCG00003675 NA coding upstream 161916 14191868 ~ 14204400 (+)
AMCG00003680 NA coding downstream 2546 14385138 ~ 14388550 (+)
AMCG00003678 LOC108270052,LOC107665105,LOC107729283,LOC108428681,LOC107589599 coding downstream 25837 14408429 ~ 14416083 (+)
AMCG00003683 NA coding downstream 157952 14540544 ~ 14548128 (+)
AMCG00003681 NA coding downstream 173398 14555990 ~ 14558193 (+)
AMCG00003682 NA coding downstream 181936 14564528 ~ 14580910 (+)
G2380 NA non-coding upstream 286989 14079112 ~ 14079327 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 825162 13539972 ~ 13541154 (+)
G2334 NA non-coding upstream 851251 13514660 ~ 13515065 (+)
G2333 NA non-coding upstream 853318 13512600 ~ 13512998 (+)
G2332 NA non-coding upstream 853785 13512194 ~ 13512531 (+)
G2446 NA non-coding downstream 38139 14420731 ~ 14421310 (+)
G2517 NA non-coding downstream 623754 15006346 ~ 15030368 (+)
G2563 NA non-coding downstream 732037 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 733113 15115705 ~ 15116972 (+)
G2571 NA non-coding downstream 746004 15128596 ~ 15130200 (+)
AMCG00003655 xdh other upstream 1159477 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 1323719 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 1449314 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 2636325 11725083 ~ 11729991 (+)
G1989 cnr1,LOC104936193 other upstream 2788987 11573731 ~ 11577329 (+)
G2440 NA other downstream 35924 14418516 ~ 14419732 (+)
AMCG00003690 NA other downstream 469160 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 918488 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 1642279 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 2649978 17032570 ~ 17042594 (+)

Expression


Co-expression Network