RNA id: AMCG00003679


Basic Information

Item Value
RNA id AMCG00003679
length 4348
RNA type mRNA
GC content 0.45
exon number 18
gene id AMCG00003679
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14366316 ~ 14382592 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCACGCCGTGTGTAAGAAAACAGTGTACGCCGTGATGAAGTTAGTGAGTGAATGTCGTTCCTCTCTGCGTTTCCCGGCGCCATTATCAGACTTGGTAGGCGTTGTTATTATTAGCCGAAAGCCATATTAAAACAGTGGTTATGGGAAATTATTTTCTCGCTACTGAGTCGTGGGTAGAACAGCTTTGTGAGTCTAGACGCGCCGCAGTTTGTAGTGGTGGTTTATCTGCCGAGTGCATGAGATCGCTCCGCACCAACTGATGGACCGCATAGGATTTAGGTAGTTGTCACATTTTGTGTTACTTGAAAGCCATCAGCTGATCCAGTTTGCAGCCTCGGCGCTCCTGAAGCTCTGGACCGGACGTCTCCTGCTAACTGAGTCGCAAGcaacgtgtgtgtgttgttttgtcatTATTAGACATTGGCACAATTATTACCGGGGTCTGTGTCTCCTCTTCCTTGCGCGTCATCGCAGCTGACTTGACAGCCTCTACGTCATCGCCTGCGTTGAGAGACGGGCACCGTACCCGGGCTCACCCAGCCTGACCCTTAAGCATAAgCGCACTCGCCCAGAACAGGGTTGTGTGAGACCCAGGATCCTTTGAGGAGGCATGTCTGAGGGAGACGGGAAGTCTGGTCCAGCCTCTGGGATGGAGGGGAAGCCGGAGTCCATGTCTACCACACAGGGAGTCTCCTCCATGTCCCCCCCGGTGTCGGCTGTGGCCCAGGGTCCGCCAGCTACTGAAGATGAGGAAGAAGAGAGCGAGGATGAGTCAGAGATCCTGGAGGAAAGCCCCTGTGGACGGTGGCAGAAACGGAGGGAGGAGGTGAATCAGCGTAATGTACCTGGCATCGACAGTGCCTACCTAGCCATGGACACCGAGGAGGGAGTGGAAGTGGTGTGGAATGAGGTCATGTTCTCCGAGAGGAAGAACTTCAAACTACAAGAGGAGAAGGTCAAAGCAGTTTTTGATAACTTGATCCAGCTGGAGCACCTGAATATTGTCAAATTCCACAAGTATTGGGCAGATGTAAAAGAAAACCGGGCCAGAGTCATTTTCATCACCGAATATATGTCTTCAGGAAGCTTGAAGCAGTTTctgaagaagacaaagaaaaatcaTAAGACTATGAATGAGAAGGCTTGGAAGCGGTGGTGCACTCAGATCCTGTCAGCTCTCAGCTACCTCCACTCATGTGACCCCCCGATCATCCATGGCAACCTCACCTGTGACACAATCTTCATCCAGCACAATGGGCTCATCAAAATCGGCTCAGTGGCTCCTGATACGATCAATAATCATGTCAAAACTTGTCGAGAAGAACAGAAGAACTTGCACTTTTTTGCACCGGAATATGGAGCGGTCGCAGATGTCACGACAGCTGTTGATATATATTCTTTTGGAATGTGCGCCTTGGAGATGGCTGTTCTCGAAATCCAGAGCAACGGGGAGTCTTCATACGTATCGCAGGAAGCTATAAACAATGCCATTCTGTCCCTAGAGGATACCTTGCAaagaGAGTTCATTCAGAAGTGTCTGGAGGCGGACCCATTCCGACGGCCCACGGCCAAGGAGCTGCTCTTTCACCAGGCCTTGTTCGAAGTGCCCTTGCTGAAGCTCCTGGCCGCTCACTGCATCGTCAGCCATCAGCATATGATTCCTGAAAACGCTTTAGAAGAAATTACCAAAAACATGGACCCAAACCTGGTGATCGCTGAGACCAAGGATCGGGTGCAGCTAAAGCTTTCTCAATTTCCTGCACTTGAGCTGGATAAGTTCTTAGAAGATGTCAGGAATGGGATCTACCCGCTCACGGCGTTTGGCATGCCCTGTccccagcagccccagcaggAAGCGGTGAAATCCCCCATCGTTCCCCCCTCTGTCAAGACTCCCACCCCAGAGCCGGCAGAACTGGAGATGAGGAAGGTTCTTCAAATGCAGTGTAATATCGAGCCAGTGGAAGAAGGAGCTAAACACCATCTAACATTGTTATTAAAACTGGAAGACAAGCTAAACCGGCATCTTAGCTGTGACTTGTTGCCCAATGAGAATGTGCAGGAGCTGGCGGTGGAGCTGGTTCAGCTAGGATTCATTAGCGAGGTGGATCAGACCCGACTCACTTCTGTTCTCGAAGAGGCCTTTACAAAGTTCTACAACCGCAACGGCTCCCTCAACCCCGTGACCGTGTCCTCATAGCGACCTGCCGCCGCCACGGACAGCAGCCTCCACGATCCACAGCCCTCCCTCGCAGCACAGGACTTCATATCGCAGCGACAAAGCATCTTTTGAAACCCCGAAAGTGACTTAGAAGGATACCTTGTGATCCCGATGATCGAACCGAGGGGGGGGCGGGGCTGTGGCTCCTGTTTCAGTGTAGCGTCTGCTTGTATATTTAAGACACAATCGTCAGTATTACCATCTGTATTTGAACCTCTCTGATCTACCTGTATTGCAGGATCATGCTGTATGTAATACACGTCTACACGAGCACATTCTCttgctctttattttttattctcttgcCAACAAAGTGCATGGTCTTgcgtttgtatttttttttcttaaaatggaTGAGGTGTGTAATCTGGTTttgtgggttttattttgtttagtctaccattttgtttttcctatttttccaCAAGATTTCACTCGCCAGTTCCACCTTTGttgacacatttgttttgtttttccttcagcaCTGTCATGTAATAAAGATTTTCCTGTAGtactttttttaaggtgaaaGCAAAGTTGaccatttttctttccacaaaaGCCACTGGACTTGTCCCGTTGAGTCTGAGCCAGCACtggggaaagtgtgtgtgtttgtgtgggggttggggggtgatCAATTAGTTTAGAGAAGAGATAGTAGGGAAGTAGTCTGTTACAAAAACTCCCCATATTCTCTGGTTGACTTTCGATTCAATGGGGCTGCTCTTTTGTTGAATGTCTGCATCTTCTCAGAGCCATTTCAAATCCTGCTCAAGTGTGTCGCTATGGGGAGGCCTATGAGCAAAACACGGCATAGGCAGGTTACTGTGAAAACGGGCCCTGCTGTCTGAACTGGCACGAGTGTCATCGTTTGATTGTAATGTACCGTACGATGGAAGGGCAGACCTAGAATTCAGTAAGGAAAACGCGGTGTGGAGGGGGATGTTGACGGAGTTGCTGTTCCCTTTCCCAGGAACTTGTTCCAGGGCCTGTTtccatattgtttgttttgctgggCGCATCTTGTAACTGCTTAAGCCAGACACAGCCgagtctatttatttttgtttcttgaagTGAATCTGAAACATACATCATCTTCAAACTGTGgtattgttttgtgtgatttttttatatattatgttaccTTGTTACCTGTGTACTTTATTAGTTGTTGAATTCAGATTGTGAAAGAGCTAAGTGCTCTGTGTCTAGGGTTCTTGGTCATTTTCCTCATCACAGGAATCTCTGAGAAGCCAGATTGAAATGTACAACAGCTTAGTGATGCTCTTGACCGAGACCAGCACTGAGACTGTGTGGGACGCAGGGCTCAATTTGGTAGAACTCTTGGCAGTGTGTGACAAGGACAAAGGCATCAATGTGTGGTTAGATGACTGAAAGATTTAACTAAAACCTGATACTGATGGAAGTCATAGTTAACTGCCAAAGCTATTCCTAACCGTTATCTAAATTGAAAATCAATTACAGAAcaatgggaaaaaatataacTTGTCTAGTCTtgtcaaatgtaatttttcctttatttgatacagaagacatttttatatttttattacatgaaGATTAGATAAAATAAAGTCAAGCTCAGACTGGCTCAAACTTCCACAACCAATCCTGGCATGGGCATACATTTCATATCATATACTGCCTGTTGAGCCAGGTGTAAAATGGTTCACTGTAACATACAGTACAATGTCCTTTATTCTCACGATTTACAGTGTTGAATGATACCAGATAATGCTCTATAAATAATGCCagtttgttttccctttctgGCAGCTGTTGATGCTTATTGAGGATGGATGCCCCTAAATATACGagtacaataaaatgtgaatttggctgctgaaatacatcaaaacaatgTTAGTCTTAAATGTGATACATTAACCACACCATACAATTGAGTAACgaaatcatacatttttgtagGTAGGACATGCTTATCTGCTATCCCTTAAGTTGCCTTGGGATTTATATAGGCATCTGTTTAATGGCGCATTCTTTACATTAGTAACATGCATTTTGGTGCAtgttatgaattaaaaacatttcaatgaaattcaaaaacgtaaaaaaaaatacacaaaaaaaaaacaata

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08875 NRBP; nuclear receptor-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2884 lncRNA upstream 286989 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 825162 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 851251 13514660 ~ 13515065 (+) True G2334
TU2829 lncRNA upstream 853318 13512600 ~ 13512998 (+) True G2333
TU2828 lncRNA upstream 853785 13512194 ~ 13512531 (+) True G2332
TU2960 lncRNA downstream 38139 14420731 ~ 14421310 (+) True G2446
TU3032 lncRNA downstream 469160 14851752 ~ 14866698 (+) True AMCG00003690
TU3058 lncRNA downstream 623754 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 732037 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 733113 15115705 ~ 15116972 (+) True G2564
AMCG00003674 mRNA upstream 30647 14329530 ~ 14335669 (+) True AMCG00003674
AMCG00003672 mRNA upstream 37631 14299567 ~ 14328685 (+) True AMCG00003672
AMCG00003671 mRNA upstream 73553 14233934 ~ 14292763 (+) True AMCG00003671
AMCG00003676 mRNA upstream 143412 14220132 ~ 14222904 (+) True AMCG00003676
AMCG00003675 mRNA upstream 161916 14191868 ~ 14204400 (+) True AMCG00003675
AMCG00003680 mRNA downstream 2546 14385138 ~ 14388550 (+) True AMCG00003680
AMCG00003678 mRNA downstream 25837 14408429 ~ 14416083 (+) True AMCG00003678
AMCG00003683 mRNA downstream 157952 14540544 ~ 14548128 (+) True AMCG00003683
AMCG00003681 mRNA downstream 173398 14555990 ~ 14558193 (+) True AMCG00003681
AMCG00003682 mRNA downstream 181936 14564528 ~ 14580910 (+) True AMCG00003682
TU2754 other upstream 1209689 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1323719 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 2788987 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 2874873 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 4585414 9777508 ~ 9780902 (+) True AMCG00003570
TU2954 other downstream 35924 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 1653071 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 3299225 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3755163 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3764068 18146660 ~ 18152314 (+) True G3108

Expression Profile