RNA id: TU3119


Basic Information

Item Value
RNA id TU3119
length 1268
lncRNA type intronic
GC content 0.36
exon number 1
gene id G2564
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15115705 ~ 15116972 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aattaataaaaacacatgtgatggtgtttttttaattgatatacgGTATAtgtactcagcaaaaaaagaaacgtccctttttcaggacactgtaataattttgtaaaaatccaaataactttacagatctatattgtaaagggtttaaacaatgttttccatgcttgttcaatgaaccataaacaattaatgaacatgcacctgtggaacagtCATTAAGACACtgacagcttacagacggtcgGCAATTAAGGTcgcagttataaaaacttaggacactaaagagacctttctcctgacaccaaaagaaagatgcccagggtccctgctcatctgtgtgaacgtgccttaggcataatgcaaggaggcatgaggactgcagatgtggccagggcaatacaTTGCAATGTCCACACTGTGAGAcacctaagacagcgctacaggagacaggaaggacagctgatcgtcctcgcagtggcagaccatgtgtaacaatacctgcacaggatcggtacatctgAATAttacacctgcgggacaggtacaggatgcaacaacaactgcccgagttacaccaggaacacacaatccctccatcagtgctcagactgtccgcaataggctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtcctcaCCAGACATCACTGGCAACAACGTTGCTTATGGGCACAAAACCACCTTCGCTgcacgtgatttcctgcaagacaggaatgtcagtgttctgccatggccagtgaagagcccggatctcaatcccattgagcaggtctgggacctgttggatcggagggtgagggctagggccattcctcCAGAAATGtgcgggaacttgcaagtgccttggtggaagagtggggtaacatttcacagcaagaactggcagatctgggtcagtccatgaggaggagatgcactgcaggacttaatgcagctggtggccacaccagatactgactgttacttttgattttgaccctccctttgttcagggacacattattcaatttctgctagtcacatgtctgtgaaacttgttcagtttatgtcttagttgttgaatctttttatgttcatacaaatatttacacgttacgtttgctgaaaataaaagcagttgaaagtgagaggacatttcttttcttgctgagtatatatttacttaaaactagaaagatgcaaaaactaaaagtaaaagtTTACGTCAATATGTTGTGaaaggttctttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3118 lncRNA upstream 868 15114629 ~ 15114837 (+) True G2563
TU3058 lncRNA upstream 85337 15006346 ~ 15030368 (+) True G2517
TU3032 lncRNA upstream 249007 14851752 ~ 14866698 (+) True AMCG00003690
TU2960 lncRNA upstream 694395 14420731 ~ 14421310 (+) True G2446
TU2884 lncRNA upstream 1036378 14079112 ~ 14079327 (+) True G2380
TU3126 lncRNA downstream 11624 15128596 ~ 15130200 (+) True G2571
TU3159 lncRNA downstream 193349 15310321 ~ 15318228 (+) False AMCG00003702
TU3165 lncRNA downstream 193349 15310321 ~ 15318228 (+) True AMCG00003702
TU3193 lncRNA downstream 256223 15373195 ~ 15377637 (+) True G2619
TU3217 lncRNA downstream 300004 15416976 ~ 15419869 (+) True G2641
AMCG00003695 mRNA upstream 19181 15065016 ~ 15096524 (+) True AMCG00003695
AMCG00003696 mRNA upstream 61334 15019408 ~ 15054371 (+) True AMCG00003696
AMCG00003691 mRNA upstream 110428 14996897 ~ 15005277 (+) True AMCG00003691
AMCG00003690 mRNA upstream 248947 14853281 ~ 14866758 (+) False AMCG00003690
AMCG00003688 mRNA upstream 498513 14607986 ~ 14617192 (+) True AMCG00003688
AMCG00003694 mRNA downstream 27650 15144622 ~ 15156393 (+) True AMCG00003694
AMCG00003703 mRNA downstream 138084 15255056 ~ 15289576 (+) True AMCG00003703
AMCG00003702 mRNA downstream 184108 15301080 ~ 15317830 (+) False AMCG00003702
AMCG00003705 mRNA downstream 217029 15334001 ~ 15334318 (+) True AMCG00003705
AMCG00003701 mRNA downstream 236506 15353478 ~ 15370866 (+) True AMCG00003701
TU2954 other upstream 695973 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 1959078 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 2073108 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 3538376 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3624262 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 918691 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 2564845 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3020783 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3029688 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4251221 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile