RNA id: AMCG00003683


Basic Information

Item Value
RNA id AMCG00003683
length 1272
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00003683
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14540544 ~ 14548128 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCACACAGCGCAGACGCACCGCGAGACGCAGCGACACGATTTTGCTCTTCAACGAGACTGAGTTTTGCTACAGATCAGCGACAGAGCAGCGACAGCAGGCCTAGCTACACGCGAATTTGCTCCGTCCGTGGAAACATTCGCTGGTTGTACCAAGTGACTCAAGATTCAGTGGATCAGGGTTTAGGAGTCTGCGTGCAGAGAAAGATCCTGGCTTGGTTTGACAAGTGTGACTCTGCTGGGCTCTCTGAGTCCAGCACCCTGCAAGCCAGCAACCCATCTGACTTGGACGCACAGGTGTCTGGGGAGCAGACACAGAGTGGAGGAGGGCCAGAGGAGCCCATTGGGAAGGAGGATTGTTTATCCATAGATGCATTTGAGTGCTCAGAAGTCAGTGCCCTGTGCTCCATGGGGAGTGAGGACACAGAAATCGGTGCCAGTGCCCACTTCTCCTCTGACAGCGCCGAGCAGGAGAGCCCACGCTGTGGCCCTGCAGAACTCCCTGTTGGCTGCCAGGATGAGAACGGGCTCAGCGATGCTGGCACCTCGGTCAGCAGTGTGGAGCCAGTGGTGAATAGCAGTGCTTTCCACCTGGAAGCTGCCTTTGTGGAGGCGAACTCAGTCACAGAGAGTGTGGGCAATGAGCTGCAGTACAAGTGTGCCGGCTGCCTGCAGTATCACCAGAGTCTGGCCTCCCTGCAGGCCCATCTGACACAGGGCTGGAGAGAGGGCTACAGTTGTGGGGTTTTCTACCGCACGCTGCTCTCAACATACCAGAGGAGAGGCCAGCAGTACAGGGAGCCGAGTCCCCAGGGCTCCAGGGCTCCTAGCAGCTCATCGGTCAGCAGTGCGGGGCTGGTTATCAATAATAGTGCTTACATGGACCCTGCATTTGTGAAGGCCATCTCGATCAGAGAGACGGTGGGCAATGTGCCACGGTACAAGTGTGCCGGCTGTCTGCAGTACTACTACAGTATAGCCTCACTGCAGTGGGaactgcctaaaacttttcTGGAGCAAACAGAAAATCACAACACCTCTGTGAGTGGGAACGAAATTGGTACTCTTGAGTTCTTTGCCCCTGAGACAGTGCGGGTTGGACGGTACCGGGCACTTCCTGCCACAGTGTGGTCAGTGGGAGTTCTCCTGTATGTCCTGCTGTGCGGCTCGTACCCTTTCTGTGATGGCCGCGCAATTATACAGGGGAAGCTCTCTTTCCCCAGTGGGCTCTCAAAAGATGCTGTAACATCTCTGCTGCAGTGGATGGCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2960 lncRNA upstream 119234 14420731 ~ 14421310 (+) True G2446
TU2884 lncRNA upstream 461217 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 999390 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 1025479 13514660 ~ 13515065 (+) True G2334
TU2829 lncRNA upstream 1027546 13512600 ~ 13512998 (+) True G2333
TU3032 lncRNA downstream 303624 14851752 ~ 14866698 (+) True AMCG00003690
TU3058 lncRNA downstream 458218 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 566501 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 567577 15115705 ~ 15116972 (+) True G2564
TU3126 lncRNA downstream 580468 15128596 ~ 15130200 (+) True G2571
AMCG00003678 mRNA upstream 124461 14408429 ~ 14416083 (+) True AMCG00003678
AMCG00003680 mRNA upstream 151994 14385138 ~ 14388550 (+) True AMCG00003680
AMCG00003679 mRNA upstream 157952 14366316 ~ 14382592 (+) True AMCG00003679
AMCG00003674 mRNA upstream 204875 14329530 ~ 14335669 (+) True AMCG00003674
AMCG00003672 mRNA upstream 211859 14299567 ~ 14328685 (+) True AMCG00003672
AMCG00003681 mRNA downstream 7862 14555990 ~ 14558193 (+) True AMCG00003681
AMCG00003682 mRNA downstream 16400 14564528 ~ 14580910 (+) True AMCG00003682
AMCG00003688 mRNA downstream 59858 14607986 ~ 14617192 (+) True AMCG00003688
AMCG00003690 mRNA downstream 305153 14853281 ~ 14866758 (+) False AMCG00003690
AMCG00003691 mRNA downstream 448769 14996897 ~ 15005277 (+) True AMCG00003691
TU2954 other upstream 120812 14418516 ~ 14419732 (+) True G2440
TU2754 other upstream 1383917 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1497947 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 2963215 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 3049101 11490185 ~ 11491443 (+) False AMCG00003606
TU3283 other downstream 1487535 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 3133689 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3589627 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3598532 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4820065 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile