AMCG00003804 (fyn,LOC103458010,LOC106529781)


Basic Information

Item Value
gene id AMCG00003804
gene name fyn,LOC103458010,LOC106529781
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18701643 ~ 18779760 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003804
ATGTGCTGTGTCGGCGAAAAGGGCCGGCAAACCGTGATTGTCCGGCTCTCCTTACCGCATCTGGCCATTAAGGCAAGTGTTTACCAGTCGCCATATGTCGTCAACTTACCCgacattcattcatttggcCGGCGAATTTGGATAATGGGCTGTGTGCAATGCAAGGATAAAGAAGCAGCAAAACTTACAGACGAGAGGGACACCAGTATAAGCCAGAACGCAGGCTATCGCTATGGGGCAGATCCCACACCACAGCACTATCCCAGCTTCGGTGTCACTGCCATTCCAAACTTCAACAACTTCCATGCGCCCGGTGGTCAGGGGATGACTGTGTTCGGTGGGGTGAACTCGTCCTCTCACACCGGGACCCTGCGCTCCCGCGGTGGAACAGGCGTTACTCTATTTGTGGCACTTTATGACTATGAAGCACGGACAGAAGATGACCTTAGCTTTAGGAAAGGAGAGAAATTTCAGATACTGAACAGCACTGAAGGGGACTGGTGGGAGGCCCGCTCTCTGACAACGGGTGGAACCGGCTACATTCCCAGTAATTACGTGGCTCCAGTGGACTCTATCCAGGCCGAGGATTGGTACTTTGGTAAACTTGGCCGGAAAGATGCAGAAAGACAGCTTCTTTCAAATGGTAACCCCAGAGGTACCTTCCTCATCCGAGAAAGTGAAACCACCAAAGGTGCCTTTTCCCTGTCTATACGAGACTGGGATGATATTAAAGGAGATCACGTGAAACACTATAAAATTCGAAAGTTAGACAGTGGTGGATATTATATCACAACCCGAGCCCAGTTTGAAACTCTCCAGCAGTTGGTCCAGCATTACACAGAGCGAGCTGCAGGCCTGTGCTGTCGCTTAGTGGTGCCCTGCCATAAGGGGATGCCACGGCTAGCTGACCTGTCTGTCAAAACCAAAGACGTGTGGGAGATCCCGAGGGAATCCCTGCAGCTCATCAAAAGGCTCGGGAATGGGCAGTTTGGGGAGGTTTGGATGGAAAGTGCTGATGGTTTGTGCTTTAATTTAACTACGGTGTGCGTGAATTACTCACCACATACTGTGGGCCTGGCTCCTGATGCATGGGAAGTTACCAGAGATTCTCTTGATTTGGAAACAAAGCTGGGGGCAGGCTGTTTTGCTGATGTTTGGTGTGGTAGTTTACTGGATTTCTTAAAAGATGGAGAAGGACGGGCATTGAAACTGCCAAACCTTGTGGATATGGCAGCACAGTTACAGAATGGATGTTGCTGcagcattctttaa

Function

symbol description
fyn Enables several functions, including disordered domain specific binding activity; phospholipase binding activity; and signaling receptor binding activity. Involved in several processes, including T cell receptor signaling pathway; cellular response to amyloid-beta; and peptidyl-tyrosine phosphorylation. Located in cytosol; endosome; and plasma membrane. Colocalizes with membrane raft. Implicated in Alzheimer's disease and schizophrenia. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: tyrosine-protein kinase Fyn isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003804 True 1272 mRNA 0.50 10 18701643 18779760

Neighbor

gene id symbol gene type direction distance location
AMCG00003799 tube1 coding upstream 18910 18670724 ~ 18682733 (+)
AMCG00003800 NA coding upstream 33505 18622879 ~ 18668138 (+)
AMCG00003795 hdac2 coding upstream 282143 18398255 ~ 18419500 (+)
AMCG00003797 NA coding upstream 352277 18348135 ~ 18349366 (+)
AMCG00003798 NA coding upstream 353512 18347891 ~ 18348131 (+)
AMCG00003803 NA coding downstream 4651 18784411 ~ 18799944 (+)
AMCG00003805 NA coding downstream 27562 18807322 ~ 18808608 (+)
AMCG00003802 rev3l,LOC107569208,LOC104962055,LOC107705450 coding downstream 52352 18832112 ~ 18878535 (+)
AMCG00003813 cdk19,LOC103371529 coding downstream 223296 19003056 ~ 19003858 (+)
AMCG00003814 cdk19 coding downstream 237245 19017005 ~ 19031747 (+)
G3269 NA non-coding upstream 156105 18544984 ~ 18545538 (+)
G3265 NA non-coding upstream 261977 18438806 ~ 18439666 (+)
G2967 NA non-coding upstream 1445193 17254266 ~ 17256450 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding upstream 1491602 17208035 ~ 17210041 (+)
G2861 NA non-coding upstream 1767623 16868299 ~ 16934020 (+)
G3370 NA non-coding downstream 165822 18945582 ~ 18946131 (+)
G3373 NA non-coding downstream 169994 18949754 ~ 18950254 (+)
G3375 NA non-coding downstream 171492 18951252 ~ 18971124 (+)
G3391 NA non-coding downstream 305211 19084971 ~ 19086715 (+)
G3496 NA non-coding downstream 645247 19425007 ~ 19425344 (+)
G3108 NA other upstream 549329 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 559010 18131919 ~ 18142633 (+)
G3047 NA other upstream 1017655 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 1659049 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 2662003 16024871 ~ 16039640 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 492205 19271965 ~ 19397686 (+)
G3751 NA other downstream 2769441 21549201 ~ 21549533 (+)
G3771 NA other downstream 2966090 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 3110763 21890523 ~ 21901865 (+)
G3799 med23 other downstream 3142876 21922636 ~ 21923787 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017047 fynb coding NC_007131.7 CM002904.2 328412 ~ 396013 (+)