G3375


Basic Information

Item Value
gene id G3375
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18951252 ~ 18971124 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4101
TTAACGCCCGTTCCACAGGTGcgtgttcattaattgtttatggttcattgaacaggcatagtttaaaccctttacaataaagacctgtaaagttatttggaatTTTACAAAAAGAGacgtttattttttgtgtggagTATACATACTATACAGATCTTTGACTATGACTTGCAAGAACTCTTATTTAAAGACATAACTATTTTTAAGCCTGCTCCTGGTTAAAGAGAATCAAATTAATTAGGACCAGTGCTGTGCACTCTGCATAGGCGAAATGCAAGAATCCGGGGAActtctttaaataaagtaaaacaacatAGAAAGCAAACTCATTTATTAAAGCATCAAGCTCATGGTACAGATATATTTTCGCACATCTTAACCAACCAAGGAAGAGcaaaaacagaatttaaacacCAAAGTTTCCCTTCAAAGCATCCCGACACAGTCCTGCAACGGCACCTATTAACCTATTGTTATCGGAGGCGTGTAATAATTTCCGCCTGAATATCCACCACACACTATCAAggggggatttttttattttggtaaactCCATTCTTACCACCCAACTTGTGAACAAAAATCCCCCAGTCATTTggaacacttaaaataaaaattacagaagaaaaaaattggtCCGCAGTAAAAatgcttgtttcttttttcagtaaaaaaataaaaataaaataccaaaagtTAAAGCAAATGACCTAGttttatagaagaaaaaaatgttccAAACTAGAAGACCCCAATCACTTTGTAATgggaaattaagttaaaaaaaaaaaaaatccataattgTCACCTCAAAGATGTTTTTGGAGAGGACAGGTGCCAATACCTTTAACCAATTACCTCAGAGCTCCTATTAGTGTGGCTGCTGTAAAATGTTTGGGCAGTTTCCCGTAGGGGTTCAACTTGGCAGCCACAGCAAGGACCATTCTTAGGGTTGGTCCTTAGGAAATACAGACCCAAGTAAGTCAGTTGACTGCACACTTTActggtgtcttttttttttttttttttactgggtCCTTGCTTGAGCTGCAGGTGGGTTTCAAGTGGTCCTTTACAGTAGAAATCAGTAATTGAGGCAGTAATTTGAATCTCTGCTCATTCAGCAGTATACTCTTATTGTTTTTAGGAGCTTTCTTTAACATCCCATAAGAAactcaaaacaaagaaaattaaaacataaaagttaGCTATAGTGCTGAAAGTGGTCCTGGTTTTTTTGATACAGTATTGAAGTCACCTGCAAGCACCTGTTACTTAGGTCAGATCAATGTATGCGATTCTGGTAGAAGCAGAAGCATTTTGgattcataattaaaaacattgattcACTGCCCAACATCATTAATTATGACACCATTTAATCATTCAATAAACACCAGAGTCAGTGTATTTAGGATTTTCTTTAAGCACTATAGTTTTACATGGCAAGAAATGTAGTTTACAAGCACTGTCCAATTCTTAACCatggcaaagaaaaaaagatcaaGTTCAATTAAACCATTACCAGAAGAACCCCGTCCCATTATGGTAATTACAGCTGACAAAACGTCATTAAGATTTAGCACATTACCTTGTATAGGAGGAACAGAACGCAGCGAACAACACTTTTGAGCAATACAGCACTAGTAGTCACATGCACCACAATGTCACAGGATTTTTCCGTCACTGAACAAAGGGCATTGATGCTGCTCCGAAAACTGCAATGCAGTCACATTTTGGACCAATTCACTGCAGAAACATCTGttcacaattaaattaataaagtgacAGTTTATGCAACACTTATATGTAGAATGATCCGGGATGACCCTGGCATGCTCAGATCAGTGTGCGTCTATTGTATGGTTACCAATTtctctacaaaaaaaaaatatatatatcgttTAAATAAACCACCTCTCTAAGCAAAGAATCTAATTCATTACATTCAGTCAGTCCAGCACGGCGCTACTGGGGGAGCTACACACAATGTCAAGCACCATTCTCTGGCTGCAGTGTCATTCATGTACAATCACGGTCTCACTACAAAGGGGAAATCACGCTGGTAGATTGTTCTACTCCAGGCCACATTACTGCATCAGCTCAGACTAACACTTCCTTGGCATTTCCTCCTGCTTACCTGAAACCACAGATCTAGGTATTTAAGGTGACTAACATGCTATTGACTAAATATTACATAGACCTTTTAATGTAGGTCTTCTAATCATTACCAACTTTTCAATCAAGGTCCATCTTCGGTTAGGGAGTACAGCATCCacaaattgcaaaatattaGGTATGTGTAGTGAGGCTTTATAATCTGGTTCGGTGCTCTAAATATCAACCAGTCTTTTATTCTTGTATCCCAGTTTTACCCAACACCAGTGAAACTAAGCCTGGAGTGATCTTGCCtatgaaaaaacaattaaagtctGCCGTACACATTGCATTGACTATTTCTATTTGAGTTAAGATGCAAGGTCAGATTTTCTATTAGTATACAATACCATAGGAATAACAAATTgtagtcatttaaaaaatactcatgatttttttttttttttttttatttattttttaatatatattcatctTGTACCCGTGTCGCACTCACCTCGGGATGTTGCGGAGGTCCCCTGTTCCTTTGGTCTCATCTTGCCGGGAAAACCACACCTCCAGCAGCTTCTCGGTCCCCTCGAAGAAGTGTGCACCGTTCTCTTCCATCGTGAGACAACAGACACCGACAACAGAAATTATacgttggttttgttttccaaattcaGTAAATCCTAGTTTGAGATTTATAACTTAAGATTTGTTTGTACAGTCCTTTAGCAATCCAGGTGTCTTTGCTTGATTTTACCGTCTTCCCTTTTGCAGAGAATACCGTTTAGCGAGCGCTAGCTAATATCGCCGGCCATACTGTGTAAAGCCAAGATGCCTGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4101 True 2947 lncRNA 0.37 2 18951252 18971124

Neighbor

gene id symbol gene type direction distance location
AMCG00003802 rev3l,LOC107569208,LOC104962055,LOC107705450 coding upstream 72717 18832112 ~ 18878535 (+)
AMCG00003805 NA coding upstream 142644 18807322 ~ 18808608 (+)
AMCG00003803 NA coding upstream 151308 18784411 ~ 18799944 (+)
AMCG00003804 fyn,LOC103458010,LOC106529781 coding upstream 171492 18701643 ~ 18779760 (+)
AMCG00003799 tube1 coding upstream 268519 18670724 ~ 18682733 (+)
AMCG00003813 cdk19,LOC103371529 coding downstream 31932 19003056 ~ 19003858 (+)
AMCG00003814 cdk19 coding downstream 45881 19017005 ~ 19031747 (+)
AMCG00003812 tab2 coding downstream 102668 19073792 ~ 19084953 (+)
AMCG00003816 NA coding downstream 161859 19132983 ~ 19138200 (+)
AMCG00003815 pcmt1 coding downstream 197642 19168766 ~ 19180512 (+)
G3373 NA non-coding upstream 998 18949754 ~ 18950254 (+)
G3370 NA non-coding upstream 5121 18945582 ~ 18946131 (+)
G3269 NA non-coding upstream 405714 18544984 ~ 18545538 (+)
G3265 NA non-coding upstream 511586 18438806 ~ 18439666 (+)
G2967 NA non-coding upstream 1694802 17254266 ~ 17256450 (+)
G3391 NA non-coding downstream 113847 19084971 ~ 19086715 (+)
G3496 NA non-coding downstream 453883 19425007 ~ 19425344 (+)
G3534 NA non-coding downstream 741679 19712803 ~ 19713057 (+)
G3536 NA non-coding downstream 754203 19725327 ~ 19725709 (+)
G3548 NA non-coding downstream 925986 19897110 ~ 19897535 (+)
G3108 NA other upstream 798938 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 808619 18131919 ~ 18142633 (+)
G3047 NA other upstream 1267264 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 1908658 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 2911612 16024871 ~ 16039640 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 300841 19271965 ~ 19397686 (+)
G3751 NA other downstream 2578077 21549201 ~ 21549533 (+)
G3771 NA other downstream 2774726 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 2919399 21890523 ~ 21901865 (+)
G3799 med23 other downstream 2951512 21922636 ~ 21923787 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G681274 NA non-coding NC_048572.1 CM023226.2 18709194 ~ 18714820 (+)