AMCG00004288 (rab10,LOC102798439)


Basic Information

Item Value
gene id AMCG00004288
gene name rab10,LOC102798439
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41438900 ~ 41442184 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004288
ATGGGAATCATGTTAGTCTATGACATCACAAATGCCAAAAGTTTTGAGAACATCAGCAAGTGGCTGCGAAACATAGATGAGCATGCGAATGAAGATGTGGAGAGGATGCTGTTAGGTAACAAGTGTGACATGGAGGACAAGCGAGTGGTACCAAAGGCAAAGGGTGAACAGATCGCAAGAGAACATGGCATTAGGTTTTTTGAGACGAGTGCAAAAGCAAATATCAACATCGAGAAGGCATTCCTCACATTAGCAGAAGACATACTTCGAAAGacCCCTGTAAAAGAGTCCAACAGTGAAAACGTAGATATCAGCAGTGGGAGTGGAGTCACAGGGTGGAAGAGCAAGTGCTGCAGCTGA

Function

symbol description
rab10 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within axon development. Predicted to be active in Golgi apparatus; cytoplasmic vesicle; and plasma membrane. Orthologous to human RAB10 (RAB10, member RAS oncogene family).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: ras-related protein Rab-10

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004288 True 360 mRNA 0.45 4 41438900 41442184

Neighbor

gene id symbol gene type direction distance location
AMCG00004287 NA coding downstream 12508 41387789 ~ 41426392 (-)
AMCG00004285 NA coding downstream 63951 41366801 ~ 41374949 (-)
AMCG00004283 tfap2d,LOC107690996,LOC107593304,LOC107721448 coding downstream 190426 41238427 ~ 41248474 (-)
AMCG00004284 tfap2b,LOC107697208,LOC107719371 coding downstream 213715 41210391 ~ 41225185 (-)
AMCG00004282 NA coding downstream 444308 40985740 ~ 40994592 (-)
AMCG00004290 NA coding upstream 27180 41469364 ~ 41473040 (-)
AMCG00004306 otof coding upstream 659505 42101689 ~ 42108599 (-)
AMCG00004307 otof coding upstream 676469 42118653 ~ 42150175 (-)
AMCG00004310 LOC107549081 coding upstream 891040 42333224 ~ 42336612 (-)
AMCG00004311 tcp1,LOC107669694,LOC107694622 coding upstream 913367 42355551 ~ 42361988 (-)
G7115 hadha,hadhab,LOC108425650,LOC106603767,LOC105898013,LOC100304971 non-coding downstream 52344 41384720 ~ 41386556 (-)
G7104 NA non-coding downstream 74835 41294176 ~ 41364065 (-)
G7035 NA non-coding downstream 517426 40916449 ~ 40921474 (-)
G7023 NA non-coding downstream 555733 40881808 ~ 40883167 (-)
G6974 NA non-coding downstream 742585 40675171 ~ 40696315 (-)
G7117 NA non-coding upstream 17625 41459809 ~ 41460321 (-)
G7130 NA non-coding upstream 132065 41574249 ~ 41574460 (-)
G7131 NA non-coding upstream 140277 41582461 ~ 41582767 (-)
G7135 NA non-coding upstream 145015 41587199 ~ 41587456 (-)
G7137 NA non-coding upstream 154475 41596659 ~ 41597449 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 1589777 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 4056947 37324010 ~ 37381953 (-)
G6441 NA other downstream 4070078 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 4651778 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 4659838 36769048 ~ 36779062 (-)
AMCG00004302 NA other upstream 622805 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 934542 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 1960769 43402953 ~ 43450255 (-)
G7608 NA other upstream 3078730 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 3097979 44540163 ~ 44561575 (-)

Expression


Co-expression Network