AMCG00004290


Basic Information

Item Value
gene id AMCG00004290
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 41469364 ~ 41473040 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004290
ctctctcacccTCATAGTCTGTATCCATCCAATCAGTGAGTCAGTCTGTATATCTATCAGTTCTGTCTCTTAGTCACAGGTCAGCGCAGTGTCAGAGTCACTGTACTGGAGGGTCCACACAGCCAGTGTACCACACAGTGAGCTAGTGTGTCtctattatctctctctctgatagAAGACCTCAACCAACACTGAGCCCAGGACAACAGCACAGCATCATGTCGATAGACGTGGGCAGGGACCCAGACCACCTGGCATTGCACTTTAACCCCCGCTTCCATGACGACACGGACGGTGAAGTAATCATTTGCAACTCCAAGTGTGACGGCATTTGGGGCTctgagcagagagacagagcctTCCCCTTTGAAAAGGGAGCAGAGGTCAAgCTGACAATGAAGGTGACAGGGGAGGGGTTCGAGGTGGACCTGCCAGATGGTCAGGAGCTATTTTTCCCCGACCGTCTGGGCCTGGACACCCTCAACTACATCCGGGTCAGAGGTCACTTCAAGGTCACCTCCTTCAAGTTCAGCTAAGCTGCCTAGTAAAGCTGCTTTTGAGACCACATTCTTTTTGTGTGTCCATTAGTGAGTGAgtgtataatattattattaatttaattattcaaagaTTATCTTTAGCTGAAATGTTTGCCCAAAGACTTACATGTCTTGCATAACTTGCATaaatgcacagcacagcaggtAATGTTAACAGACACTCCTAACcatgatgatgattaaataaatccatatatCAGTcctagtttaattaatttaaactataatatggttaaaaaaaaaaaaaaactgcagacagTTCAGAGGTAGTTTGAGCAGGATTGTGGTAACTGCTACTATAAGTTACTATAGTGCTACAACCAGTGGGGTAGGCAGGAATATTGCCCAAATAGTAGAGAGATGATGCAAGAACATGGCACCCTAGGTGAGATCTCAAAAAATcgcgcccccccccacccaggaCAAATACCAGCTTAAGgggaaataacacttttttaattttactaatataaaaacacataagaaatacaagtgcaacattttaaaaacggAGAGTCAAAACATTGTGTgcagctataaaaaaaaataataataatgtgttatttgttttatttttcagtgtttctcCTTTGTTATATTCAGAGCGGCTCCTAAACTGTCTCCCAGCACTCACGGACCCCACGTCCATGAATTTAAAGCGCGACTTCTAAATGTCTGTTGGCTAGCTAACCAGACACTAGTCGCTAGCTGGATAGCTGGATGGCGCAGCAGCTCTgacaatgatttttttttatatagtttattttttattattttttatgatgatttgcttttcattccacctcAGCTGGATTGGTTTACGAATTTAGCTAAGTAACTATTTGGTTAACTGGATCTTTTAACCCTATCCCATTTCTACCTGTTGGTAGTTTAAAGAGGCCCAGTGACACACTGCATAATGTGACGCACTGCAGCTCACAGAGGTCATGTGGTCTGTTcaactgaaataatttaatacaaccCCCAACtaataaagaagaaagaaagaaatagctGTAACTCCGTTCTAAGGtttgatgatttttttataatggCTAATACTTAGACAGGAAAGTAAATCCTGTTATGAAACTGTTGCACCATTGCCTACCAACATAATTCAATAGCTGCAGAATGTCTGGCTGATAATCAGACCACTAAACTGTCTGATGATGGGAACTGTGGATGGCTTAGGATGAAAGTAACTACAGTGAAGCAGTGCACAACTTACAAAGCAGTAATTACACTGGCATATGTGGCGTGTGAGACTGgtgctttaattaaaaccagGAAGGATGAATGGCCT

Function

GO:

id name namespace
GO:0043606 formamide metabolic process biological_process
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0043648 dicarboxylic acid metabolic process biological_process
GO:0052803 imidazole-containing compound metabolic process biological_process
GO:0052805 imidazole-containing compound catabolic process biological_process
GO:0006536 glutamate metabolic process biological_process
GO:0006547 histidine metabolic process biological_process
GO:0006548 histidine catabolic process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004290 True 1866 mRNA 0.41 3 41469364 41473040

Neighbor

gene id symbol gene type direction distance location
AMCG00004288 rab10,LOC102798439 coding downstream 27180 41438900 ~ 41442184 (-)
AMCG00004287 NA coding downstream 42972 41387789 ~ 41426392 (-)
AMCG00004285 NA coding downstream 94415 41366801 ~ 41374949 (-)
AMCG00004283 tfap2d,LOC107690996,LOC107593304,LOC107721448 coding downstream 220890 41238427 ~ 41248474 (-)
AMCG00004284 tfap2b,LOC107697208,LOC107719371 coding downstream 244179 41210391 ~ 41225185 (-)
AMCG00004306 otof coding upstream 628649 42101689 ~ 42108599 (-)
AMCG00004307 otof coding upstream 645613 42118653 ~ 42150175 (-)
AMCG00004310 LOC107549081 coding upstream 860184 42333224 ~ 42336612 (-)
AMCG00004311 tcp1,LOC107669694,LOC107694622 coding upstream 882511 42355551 ~ 42361988 (-)
AMCG00004312 NA coding upstream 891727 42364767 ~ 42366935 (-)
G7117 NA non-coding downstream 9043 41459809 ~ 41460321 (-)
G7115 hadha,hadhab,LOC108425650,LOC106603767,LOC105898013,LOC100304971 non-coding downstream 82808 41384720 ~ 41386556 (-)
G7104 NA non-coding downstream 105299 41294176 ~ 41364065 (-)
G7035 NA non-coding downstream 547890 40916449 ~ 40921474 (-)
G7023 NA non-coding downstream 586197 40881808 ~ 40883167 (-)
G7130 NA non-coding upstream 101209 41574249 ~ 41574460 (-)
G7131 NA non-coding upstream 109421 41582461 ~ 41582767 (-)
G7135 NA non-coding upstream 114159 41587199 ~ 41587456 (-)
G7137 NA non-coding upstream 123619 41596659 ~ 41597449 (-)
G7138 NA non-coding upstream 128385 41601425 ~ 41602601 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 1620241 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 4087411 37324010 ~ 37381953 (-)
G6441 NA other downstream 4100542 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 4682242 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 4690302 36769048 ~ 36779062 (-)
AMCG00004302 NA other upstream 591949 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 903686 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 1929913 43402953 ~ 43450255 (-)
G7608 NA other upstream 3047874 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 3067123 44540163 ~ 44561575 (-)

Expression


Co-expression Network