AMCG00004370


Basic Information

Item Value
gene id AMCG00004370
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44738670 ~ 44740860 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004370
ATGAACCTCAATTTCACATCCCCTGGCCACCCCATGCCAGCTCAGAGGCCAACGTCGTTCTTCATTGAGGACATCTTGCTGCACAAGCCCAAGCCTCTGAGGGAAGTGTTTTCCTCGCCCTTCGGCAGCTCCCTGGCGTCCCGGGTGCCCCTGCTAGAATATGGGTACCCCCTGATGCCAGCCCCCACGCTGCTggcaccccacccccaccacgcACTGCACAAGCCCGAGCACCACCCCTACTTCCTGACCGCGTCGGCCGATGTGTCAAACATCAAAAGGCATTTTTCTCTGCACCACCCGGAGCTGCCCGGGAAGCACTGCCGCCGCAGGAAGGCCCGGACGGTCTTCTCCGACTCGCAGCTATCGGGGCTGGAGAAGCGCTTCGAGATACAGCGGTACCTGTCAACCCCGGAGCGGGTGGAGCTGGCCACGGCCCTCAGCCTGTCGGAGACACAGGTAAAAACGTGGTTTCAAAACAGAAGGATGAAGCACAAGAAGCAGCTGCGGAAAACGCAAGACGAGCAGAAGAGCCCGGGCGCCCTGGAGCCGCCTGTGGAGAGTGAGGGCGCAGGGGCGGACAACAACCCCCAGGAGGGGAAGATCTCCGGAGGACAGGACTCCTACCTGCTGGAGGAGAATGAAGACGACGTGGACATCGAGGACGACGATATCTGCTCCCCTGATCATTTATTATAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24874 BSX; brain-specific homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004370 True 699 mRNA 0.61 4 44738670 44740860

Neighbor

gene id symbol gene type direction distance location
AMCG00004371 LOC106567641,LOC106603659,LOC108277187 coding downstream 46317 44684572 ~ 44692353 (-)
AMCG00004369 NA coding downstream 58004 44675825 ~ 44680666 (-)
AMCG00004359 NA coding downstream 70474 44657242 ~ 44668196 (-)
AMCG00004363 NA coding downstream 87398 44645284 ~ 44651272 (-)
AMCG00004360 vps11 coding downstream 121271 44606289 ~ 44617399 (-)
AMCG00004373 lim2.1,LOC105900331,LOC107579014 coding upstream 5850 44746710 ~ 44804158 (-)
AMCG00004376 NA coding upstream 434472 45175332 ~ 45187413 (-)
AMCG00004377 NA coding upstream 528324 45269184 ~ 45272999 (-)
AMCG00004381 panx3,LOC106603665,LOC106567648,LOC107747045,LOC107686209,LOC107579026 coding upstream 1120435 45861295 ~ 45867466 (-)
AMCG00004382 pknox2,LOC107686111,LOC106567647 coding upstream 1133587 45874447 ~ 45890096 (-)
G7684 NA non-coding downstream 105388 44632752 ~ 44633282 (-)
G7609 NA non-coding downstream 217852 44520175 ~ 44520818 (-)
G7587 NA non-coding downstream 330005 44408360 ~ 44408665 (-)
G7585 NA non-coding downstream 402100 44336271 ~ 44336570 (-)
G7583 NA non-coding downstream 560682 44177646 ~ 44177988 (-)
G7704 NA non-coding upstream 56646 44797506 ~ 44879219 (-)
G7714 NA non-coding upstream 398282 45139142 ~ 45143452 (-)
G7744 NA non-coding upstream 1077138 45817998 ~ 45852813 (-)
G7820 NA non-coding upstream 1446646 46187506 ~ 46189689 (-)
G7866 NA non-coding upstream 1563246 46304106 ~ 46304371 (-)
AMCG00004372 LOC108423781,LOC105921217 other downstream 26619 44623190 ~ 44712051 (-)
AMCG00004364 NA other downstream 177095 44540163 ~ 44561575 (-)
G7608 NA other downstream 216457 44520914 ~ 44522213 (-)
AMCG00004336 NA other downstream 1288415 43402953 ~ 43450255 (-)
AMCG00004313 NA other downstream 2207664 42376726 ~ 42531006 (-)
G7868 NA other upstream 1566066 46306926 ~ 46307319 (-)
G7882 LOC107575789 other upstream 1727265 46468125 ~ 46468434 (-)
AMCG00004398 anc13,anapc13,LOC107756075,LOC107693524 other upstream 2142432 46883292 ~ 46887754 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other upstream 2307264 47048124 ~ 47306589 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other upstream 3722321 48463181 ~ 48480715 (-)

Expression


Co-expression Network