AMCG00004389


Basic Information

Item Value
gene id AMCG00004389
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 46300852 ~ 46319307 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004389
ACGAAACTAGATGCTTAATTTGAGCCGGAATGGACGCAGTGTCCTAAATACGTTTAACTagttattaatttcaaatactaAATAGTTAAACATGCATTATTACAACATCATTTTGCTAGCCTTTGAGCAGtataacaataatgtattattatttattttaactaagtAAACCGAATACATAGATCTGCGCATGCGTATGTCTTTTATTTTCGCGCCTGGATTCAATATTTGGAAATAGGAAAGATGGAGCTGTTGGAAACTTTACAGTTGCTGAAAATCAGTGATATTTCCCACGGATGGGTGGACACAGTGTGGGAGCTGGACTTTACCGAGACCGACCCACTGGACGCTCGCATCGAGGGAGAAGTTAACGAAAATGGACTGGAGGCCTTCAAAGCAGTTTACCAACACCTGCTCCCCTATGCCACAGAGGACAGAGCAGTTACTGAAAGTGTCTGGACGCTGTTCTCCCAGCATGGACTGTCGGGCAGTGGGCTGGTGGTGCTTCTCCACCACTTTGTCCAGACGGGTCACAGTAAGACAGCCAGCGTGCCCCAGAGACAGTGTGCCTTGAGAGCAGCTGCCATTTACTTCCTGCTGCTGGAGATCCCAGGCAAGATTGTTTCCGCTCCTGTTGTAATTGTGCCGATTCAATCACCTGTTGTCTTTAATgatctttcatttttttgcaaTAACAAAGGGAGCATAACCAGCAAGGTCTTCCACCCTGTGCTGTTTGACAAGTGCCTGGACACTGTGAGAAAGACCTGGCCACAAGACCTGGACTCAGGGAAGAAACGCAAAAAGGAAACCGCCAAGAGTTCACAGGGTGACCCAAAGGGCCGGAAAAGAGCCAAACCTCCGCGAAGGGAAGACCGAGAGCTGGAGGATGAGTTTGAGGACGGTGATCAGGATGAGGAGGAGGTCTACATCTCTGGGCAGGATCTCCTGCAGCTTCGGGAGGGCATCTTCTTCTTGGTCAAGAACTTCCTTAGGCTGCTTACCAAGTTCCCTCTGAAGGACAAGCCCCAGAACGTGCAGCACTGTGTGCAGGTGCTGTCCTCGGCGTCTCGGATTTTTATAGCACTTACCAATTTCGAGCCAGTGATTGGAGAACTAAGGTTTTCAGAAACGCAGGATATTAACAGAATGAAGAGTCTCCCTGACGTGGCCTACTGGGGGCTCAGGCTGCTCTGCTCTCCAGCTCATGGGGAAGGAAATCAGACGGTGCGCCGGGTCTTCCACAGGCTCCTGTACGTAATTCTGATGATGAGCGGTGGTGACGGATCGCGACCCTGCCTCCTCGCTCTGACCCAGCAGGTGGTCGCTGCCAAGGACATGGCCATTCGCTTTGTGAGTCACATTGTCGATGAGCTGAAGGACGATGTGCTGCCTATTCTCCGAACTCTGCTGCAGCACATCTGCGCCAAGGTGGCAGATAAGACAGAGTACCGCACCCACGGAGCTCAAGCGCTGGTCAGACTGCTGGCTAAACTGTCCTGTGCCGAATATGCTTCCTTCATCCAGTGGCTCTATGAATACTCCTGTAACGCCAAGACACAATACCGACAGTTTGGCCTGGACGTGGCCATGGCCCTGCTGGAGCAGCCGGAACGCACCCCTGAAGCCCCTCTGCCCCCAGAGCAGGCCCGCCTCCTGCAGCACAAGTTCCTGGTTCAGGCGATGATCTTCAGCCGCTGCTCCGACCGGACCGCCACCGTGCGCAGTCGAGCCTTGGCCTGCCTGGCGCAGTGTCTGGAGCAGCAGTCTCCCAGCACGGCGGAGGGCATCCAGGAGCTCATGCACGGGACGGTTGCCCGGACGATGCTGGATATGGATCACATGAGCGTTGCAGGGAATTCCGAAGGTACCCGTAATATCTCTGAGGCAAATCCCCACGTTACAGCAGGTGTCTTCAAAACCATTGAAATCACCAGTGGGGAAGATGGATCCATTTTCGATGCAAGGGACACCATCGCCATGCTCCGACAGCGGGCGAGCGATGAGAAGACCAACGTGAGGAAATCATCCTTGCAGGTGTTAATGAGTCTCCTGAAGATTGGCATGATCCCCTGCACCCCAGAGGACCTGTCCACCTTACAGGACCGCTGCCGAGACCCAGCCTTGTCTGTGAGGAAGCAGGCCCTGCAGTGCCTCACTGAACTCCTTGCTGCTCAGCCAGAGAACAGCGTGGTGCAGAAGGCGTGGCTGACGGGGGTGGTGCCTGTTGTTATGGACTCCGAAAGCTCTGTTCAAGAGAAGGCCTTGGATTGCCTCGAGCAGACTATCCTTCGCCACATCCAGAGCTACAGCCGGTTCAGCGATAAGGACAGCCGGCAGAGACTGGCCTGGGACCTGCTGACCCTCCTGAGTGGGGAGAGTCAAGACCTGTGTCGTTACCTGAGCAAAGCCTTCATCATCTGGGCCAAGCAAGACAAGTTCTCCACGGTCTTCGTCAATAACCTGATCTCTCACACGGAGACCGAGCATGCGTCCGCCGCCTGGCTGCTGCTCTCCAAGGTGGCCGGCTCCGCCCCCAGGCTCAACTACGGCAAGATACTGGAGGCCTGGGATCACATTGTCAGCAATGAGGATATCACCGTCTCAACCACGTGCCACGTACTGTGTGTTATCGGACACATCGCCAAGCATCTCAACGGGGACACCAGGGAGAGGGTGATCGAGGACATTATGAAGTGGCTGAAGGGGTTCCACGCCCCCATCATCGTCATTGGCTCCTGTGTCAGTGCCCTGCAGAGGCTGGTTCAGAGGGACTCCGTGGAGGACACGCAGAGACTTCTGAACCGGTACTGTGGGGACCTGGTTTCTCTCTGTGACTCCTATCTTTCGAACCTCATGCTGAGCGCGGACAGATCGCAGAATATCGATGAGGAGCTTGTGGTGAAGTACTTGTTCACTCTGGGGGAAGCGGCTTTGCAATGTCCTGCCAAAGTGGAGAAAAGAGTCTTCCTTCTCGTCCAGTCAATACTGGCTGCGAATGTCAGCTTGGACCCAGTCGAGGGGACGGAGGAGCTGCCCGCCTCACAGCCCCTGTCCCAGTTCAAGCCTTCCACCATGCCCACGGCAGTCAAAGCCCATGCCTTCATCACCCTGGGCAAGCTGTGTCTGCAGAATGAGGACCTGGCCAAGAAGTGTGTGCCCGCATTGGCCCGCGAGCTGGAGGTGAGCACGGAGGTGCCCGTGCGCAACAACGTGATCATTGTGATGTGCGACCTGTGTGTGCGCTACACCACCATGGTGGACCGGTACATCCCCAACATTGCCGCCTGCCTGAAGGACCCCGAGCCCCTCATCCGCAAACAGACCCTGATCATGCTGACCAACCTGCTGCAGGAGGAGTTTGTGAAGTGGAAGGGGTCCCTGTTCTTCCGGTTTGTTGTTGTACTTGTTGACCCTGATCCCAGCATTGCCAGGCTTTGTGAATTCTGTTTGGTCCACCTGCTGCTGAAGAGAAACCCTGTCATGTTTTCCCAGCATTTCATAGAGTGCATTTTCCACTTCAATGGCTATGAAAAGCATGAGAAGTACAACAAGTTCCCACAGACAGCCCGTGAGAAGGCCATGTTTTCTCTAAAAGGGCCCAAGAACAAAGAGCTACGAATGAAGATTTATAAATTCCTCCTGGAGCATTTCACAGACGAGCAGCGCTTCAACATCACCACGAAGATCAGTCAGAACGTGCTGGCGAGCTTCGTGGATGGGCTGCTGCCCCTGCACTTGGAGGCCAGTGAGCTGCTGTCGGACACCTTCGTGGTGCTGAGCCTGAAGGAGATGAAGCTCTCCGCCATGAGGAGCCGGCCGGAGGAGGAGCTGCAGCCCGATGATGATGAGATGGCCGTGGCCAATGCCGTCATGCAGGTGGCGCAGAAGAAGCTCATCTCACAGGTCCAAAAGAAGAATTTTATTGAGAATGTGATTCCCATCATCACATCCCTCAAGGCCATGCTGGAGGAGATGCGCATCCCTGCCCTGAAGGACCTCATGGCGTACCTGCGGGAAATGATGCAGGACTACCGGAATGAGGTGAAGGACTTTTTCTCAGTGGACAAGCAGCTGGCAGCGGAGCTGGAGTATGACATGAAGAAGTACGAGGAGCAGCTGCACAGGGAGGGGGAACAGGGCAACGGCAGCACTGTCACAGCGCCCGACGCCAACACTCGGCCAGGAACACCCAGGCCCTCAGTCTGCCTGTCTCCTGTCCCATCCTCGAGCGCTCGAGGCCAGGGCCCCCAGGGCGGGGCGTCTCCATGCATGGCTGGAGCTGCAGGCACCACTCCCCAGCCAATGTGGCCCTCGACGCCAGTCTTCCTCACGCCCAAGCCTGCCGGAACGACAGCGACCAGGGCTCGGGTCCTGTCTCTGAGCACTGCTGCTCTCCTCAACTCTGCCAAGAAAGTCGCAGAGAGCCTGAAGAACCAGCGCAGGAACAGTGTGAGCAGCACATCGCCCGCCCCCAGCAGCCAGCACACCCCGCTCAACACCTCAGctAGGGTCGCAAGACAGAATCGCactcccagcagcagcagcagcagcttggTAGACCGAGCGATCAGCACTCCAGACCAGACCATTGAAAATGTGACGTTTGGAGCCGGAGTCAGTTACATCTCCAGATCCCTGTTAAACTCCAGTGACAATGaGCCCAGAGATTCTGAGAAGAAAGATGCCAACGTCCTGTACTTGATGTCCCCGGACCGGCAGACCCCGCAGCCCCGGCAGTGGAACGTGGAGTCGCCCATCACCCGCACCAAGGTCAGACGCTCACAGAGGACCCCCCTGAAACCGCAGAATTAGGACCTGCTGATCTCCGGTTCAACTGGCTTCTTCCATTTACATGCTGCTTTCCGTTGTGGTcacaggttgttgtttttattttttttaatatatatatgtaacactTCCTCACACGATGCCTGATGTGGACTTGCTTGTATCTGTGAAAAGATCACATAAGGTCTATCTAAATAgtgtgaatatattaaaatatgctgACTATGGCACTTCAAACCTTTGTGTAAATCCCTTTTTGTAAGACATTGAACTTGCATAGAAGCACATTAACTGGATCTGGATTAATCGAAAGAAAGGATGTTATGcccattaaatatttacttaagGTGACCCTAAACTTGAATTCCTTAAAAGTCCTATTACAATGTAGTTATGATGGTGTTTATCCCCCATAATTCATTGTGTTTAAGATTATGGTTATTTTTCCATAATGCTGCTTATTTTAAGCTAGATGTGAAAGGATTGCAATAGTTTCTATATGGCTTTCGGTAATTGCTTCTCAGTGATGTCATTTCCTGCCTATTCTTTTTGTGCATTGTTTAACttccaaatataaacaaataaatatacaaacaaaatggtttAGAA

Function

GO: NA

KEGG:

id description
K11491 NCAPD3; condensin-2 complex subunit D3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004389 True 5400 mRNA 0.53 35 46300852 46319307

Neighbor

gene id symbol gene type direction distance location
AMCG00004390 thyn1 coding upstream 11607 46285450 ~ 46289245 (+)
AMCG00004388 NA coding upstream 46461 46236357 ~ 46254391 (+)
AMCG00004387 msantd2,LOC107588693 coding upstream 113445 46180538 ~ 46187407 (+)
AMCG00004384 NA coding upstream 301744 45981625 ~ 45999108 (+)
AMCG00004379 NA coding upstream 441578 45821901 ~ 45859274 (+)
AMCG00004397 igsf9b,LOC108427954 coding downstream 308511 46627818 ~ 46657794 (+)
AMCG00004396 igsf9b coding downstream 350667 46669974 ~ 46681968 (+)
AMCG00004395 NA coding downstream 369293 46688600 ~ 46702427 (+)
AMCG00004401 arhgap32b,LOC107715324,LOC107703512 coding downstream 474080 46793387 ~ 46797648 (+)
AMCG00004400 NA coding downstream 550018 46869325 ~ 46882912 (+)
G7765 NA non-coding upstream 379047 45919390 ~ 45921805 (+)
G7662 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding upstream 1683453 44616316 ~ 44617399 (+)
G7644 NA non-coding upstream 1712868 44587706 ~ 44587984 (+)
G7638 NA non-coding upstream 1725855 44574331 ~ 44574997 (+)
G7614 NA non-coding upstream 1757709 44530340 ~ 44543143 (+)
G7879 NA non-coding downstream 71081 46390388 ~ 46390751 (+)
G7906 NA non-coding downstream 396471 46715778 ~ 46717255 (+)
G7911 NA non-coding downstream 402522 46721829 ~ 46723088 (+)
G7949 NA non-coding downstream 672910 46992217 ~ 46997805 (+)
G7974 NA non-coding downstream 1328881 47648188 ~ 47648574 (+)
AMCG00004380 NA other upstream 332546 45962010 ~ 45968306 (+)
AMCG00004355 hyou1,LOC100380749 other upstream 1660120 44618185 ~ 44640732 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 3609743 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 4084490 42210430 ~ 42216362 (+)
G7094 NA other upstream 4793621 41459576 ~ 41507231 (+)
G7999 NA other downstream 1827581 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 2577810 48897117 ~ 49026355 (+)
G8099 NA other downstream 2613143 48932450 ~ 48934095 (+)
AMCG00004424 NA other downstream 2724283 49043590 ~ 49060055 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other downstream 2979429 49298736 ~ 49318835 (+)

Expression


Co-expression Network