AMCG00004441 (dpagt1)


Basic Information

Item Value
gene id AMCG00004441
gene name dpagt1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49797543 ~ 49804404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004441
CGAAGACTTCCGCCGCAGTGCACCACCAAATGTGTCCGTCGACGGCAGCGGAGTAGCATAACAAGGACTGACATACTTACAAGCACAATTGCACAGTAACAAGCAACCAAGACTTGTGTGTGTTGGAGTTTAATGATATTCTGCACTAAAACACATTCCGACCAGGACCATTTGGCCTGTAAAACACGTCAATGCAAACCGGAAAGCCCGTCAGCAGGGCAGCGGTCCCCGGGCTCGACCAGGAACAAGGGCAGCCGGAGCACCGAGCACAGGATGGCAACTTGCTCTGTAAACCGGAATGGTccttttaaagcaaaaatacattagGCACCGTCAATGGCATACTAAcgtgttatttttaatagcgGTTTGAAAACTGGGTATcaatatcagttttattttaattcttatcTGAAGATATAGAGACGTGTGCATAGGTTGTTAGACTTAGGTTACTTAAAACGCACCGAATACAGTATTCTGCTAACAGCTGTCCAGTAAAAAAATGTCAACTTTTAAAATGACGGCTACTGAACAACATCTAAACACGTTGAGATGAGGCTTGCTGAGACGGTCATACACTAGCTAGGTAATTATAGATGTAGTTTccgttgtttgtttgttaaagtgGACGGTTTCGCTCGGCTGGTATCGACAGTGTGACGGAGTCCAGGGAAGCGCAATTTGACACATTGGTTGAGCTCTCTCTGATATACGATGCTGTCTTCTGCGAAAATTGCCCCGCTGCCCACCTTCCCTCTTCTCATCAACTTCTGCATGTCCGCGTTGGGGTTTTTCGCTGCCCTTAAGCTGATACCCGCCTTCAAGGACCATTTTATCTCGGCCAGGCTGTACGGCATGGATCTGAACAAGACCTCCAAGAAGGAGATCCCCGAGTCTCAGGGAGTCATCAGTGGCACAGTGTTCCTCATCATCCTCTTCTGCTTCATCCCTGTGCCCTTCCTCGGCTGCTTTGTGGAGGAGCAGTGCCAAGGCTTCCCGCACAACGAGTTTGTGCAGCTGATCGGCGCTCTCCTGGCCATCTGCTGCATGATCTTCCTGGGCTTCGCGGACGACGTGCTCAACCTGCGCTGGCGCCACAAGCTGCTGCTGCCCACCATGGCCTCCCTGCCCCTGCTCATGGTCTACTTCACCAACTTTGGGAACACCGTCATTGTGGTGCCCAAGCCCTTCCGTGCCCTGCTGGGCTTGCACCTTGACCTGGGCATCCTCTACTATGTCTACATGGGAATGCTGGCTGTGTTTTGCACAAATGCCATCAACATCCTGGCAGGGATCAATGGCATCGAATCTGGCCAAGCCCTCTTCATCTCCGGTTCCATCATCGTCTTCAACCTGGTGGAGCTGAGTGggGACTTCAAAGATGACCATGTTTTCTCCTTGTACTTCATGATTCCTTTCTTCTTCACTACACTGGCCCTCTTCTATCACAACTGGTACCCCTCCTCTGTGTTTGTGGGAGACACCTTCTGTTACTTTGCAGGGATGACCTTCGCCGTGGTGGGCATCCTGGGCCACTTCAGCAAAACCATGCTGCTATTCTTCATCCCCCAGGTGCTCAACTTCCTGTACTCCCTGCCGCAGCTCTTCCATGTGGTGCCCTGCCCTCGACACCGCCTGCCCAGATTGAATCCTGAAACAGGGAAGCTGGGAATGAGCTACTCCAAATTCAAAAGGAAGGACCTGTCCAAGCTAGGAGACCTCATTCTGAAGgggGCGGAGGTGGTGCGGCTGATGGAGGTGCACAGAGGTGTCGAGGGAGAGGACGAGTTCATAGAGTGCAACAACATGACGCTCATCAATCTGGTGCTGAAAGTGCTGGGCCCGACGCACGAGAGGACGCTGACTGTAATCATGCTGCTGATACAGGTGCTGGGAAGCATGATTGCCTTCGGGATTCGCTATCACCTGGTACGCCTCTTCTATGACGTCTAGGCTTGCCACACCCAGAGGATGCTGGGAAACAAAGAGCAGTCATAATCCACCTGAGAATGTCCTCTatccattttcagttttaatccCGTAATTGTCGTCTACTGTGAAAATCTGAatgtaattttttgtttgtcttactTTTTGTGGGATGGTAGATCTCCTTTTCTGTTCGGGTGATGGGGTGCTGTCCtttaatgtttagttttgtttgtttcgtgTACAAGTTCACACAGACGGAGGAAGAAATTGAGAACAATGGTTTTCAGTTGATCGTATAATTTCCAGTTCGACACGTGCATAAACGAAGGTAGATGCAGATTTCAGCCCCAAACTGTTGGAAGCTGAGAAGTGgaataaaagtgaaaatggaCTTTTGTGCCTGTCTTTCTGAAGTAATGACTCTGTGATTCAGTGTGCTGTGCATCTGGGTCTGTGTCAGTCTTCAGTGTTAATCAGGACAGGGTGATGCCAGCTGTGGGTATCTTTCTCTACACTGCTCCATGGTAAACATAATCAGGTGGGCCATAACCTTTGAGGACTGTATTAGATTGGCAGGTTGGACTGTTTTCCTTGTGGCCGCCACAATTTAGCACAAGCCCCCTGTTTCAAACAGTCCTCAAAGAAGAGACATGCCTGGGTAACATGATAAGGAGACAACTTACTCTCCCCAGGTCTCCTTTGTCACTATATGATTTTTGAATTGTGGGGAGAACAGGTGGAAAAGCAGAAGCTGACACATTTACAAACCAAATAGAAATCAAGTTCATCCACTTCAAAACACTGTACATGAGAAGagcatgttttttaaagaacCAAGTGAGGAAAGGTACACCTGTCTCTCAAAATATAAGCAAAAGATCAAACCTTGCCTTTCTTCATGGAGAAATATGTGCAATGTGCTCTTCTCATCAGCATTACCGATTTTTTGCTACTGCTAGTGCATTTGTAAGCATTGTAGGTCTTAAAGACTTAAAAACGGGACCTCGGCCTGCTTATTTTAGAATACCAAATACAGATCTtggacctttttttttgtttggtccTATCTGTTCTACTGAATGAGATAATTTCTACTTAGATGTGTTCTTTGATTAACAGAATCTTCTGTAAAACCCCTTACAATGGCTTATGTACTTTGCTCACACTTGTTACATGCTTCCCATACAATTCATGAAGgaattaataaaatcattttttttccatgaa

Function

symbol description
dpagt1 Predicted to enable UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity. Predicted to be involved in dolichyl diphosphate biosynthetic process. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ij and congenital myasthenic syndrome 13. Orthologous to human DPAGT1 (dolichyl-phosphate N-acetylglucosaminephosphotransferase 1).

NR:

description
UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity molecular_function

KEGG:

id description
K01001 ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004441 True 3162 mRNA 0.47 9 49797543 49804404

Neighbor

gene id symbol gene type direction distance location
AMCG00004437 NA coding upstream 25290 49757121 ~ 49772253 (+)
AMCG00004434 NA coding upstream 166529 49608879 ~ 49631014 (+)
AMCG00004430 LOC107598122 coding upstream 226243 49547269 ~ 49571300 (+)
AMCG00004431 NA coding upstream 274630 49519124 ~ 49522913 (+)
AMCG00004427 NA coding upstream 367735 49425765 ~ 49429808 (+)
AMCG00004443 NA coding downstream 10869 49815273 ~ 49817818 (+)
AMCG00004454 NA coding downstream 78982 49883386 ~ 49893011 (+)
AMCG00004451 abcg4,abcg4a,LOC107597525,LOC108429752,LOC107722792,LOC107677424,LOC107587350 coding downstream 93232 49897636 ~ 49906851 (+)
AMCG00004452 NA coding downstream 147736 49952140 ~ 49963716 (+)
AMCG00004450 ube4a coding downstream 164070 49968474 ~ 49983158 (+)
G8188 NA non-coding upstream 211448 49582118 ~ 49586095 (+)
G8167 NA non-coding upstream 361792 49434043 ~ 49435751 (+)
G8140 NA non-coding upstream 549509 49246488 ~ 49248034 (+)
G8111 NA non-coding upstream 768360 49024156 ~ 49029183 (+)
G8103 NA non-coding upstream 837712 48955967 ~ 48959831 (+)
G8356 NA non-coding downstream 262031 50066435 ~ 50068081 (+)
G8371 NA non-coding downstream 333225 50137629 ~ 50139705 (+)
G8372 cbl,LOC107601723 non-coding downstream 338901 50143305 ~ 50144990 (+)
G8373 NA non-coding downstream 340967 50145371 ~ 50145823 (+)
G8374 NA non-coding downstream 343472 50147876 ~ 50148195 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 478708 49298736 ~ 49318835 (+)
AMCG00004424 NA other upstream 737488 49043590 ~ 49060055 (+)
AMCG00004421 NA other upstream 771188 48897117 ~ 49026355 (+)
G8099 NA other upstream 863448 48932450 ~ 48934095 (+)
G7999 NA other upstream 1650387 48146888 ~ 48147156 (+)
AMCG00004442 NA other downstream 1957 49806361 ~ 49814024 (+)
AMCG00004449 NA other downstream 134148 49938552 ~ 49951533 (+)
G8377 NA other downstream 346860 50151264 ~ 50157719 (+)
AMCG00004463 NA other downstream 432273 50236677 ~ 50243043 (+)
AMCG00004477 NA other downstream 936984 50741388 ~ 50753432 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030169 dpagt1 coding NC_007116.7 CM002889.2 30588856 ~ 30595372 (+)