AMCG00004449


Basic Information

Item Value
gene id AMCG00004449
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49938552 ~ 49951533 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004449
TTACAAACCCCAAACATCGCGCAGATCGGAGGCGCAGATCGGCCGGCCGTCCTGCTCGGCAGCTGTAGGACTTGCTGTCAGCGCCGCATGATAACAGCTGGACGCAGTAGTGAGTGCAGCAGAATGTGGCAGTGCTGGCGACACGTCCAGGGGTCTGTGCACAGAGCCCCCATCTCTTCCTCTAGTTGGGGTGTGAAAAGTTGCGATGGATCGACAAAAGTGTCCTGTATAACGCCTGGAAAGCACAGTTCCTCTAAAATGTACAGACAGCTGTGTCCTGGAGGGCCAGTATGGAGTCACTGGGGACTCTTCCCTTCAGTTCTACCCAGTGTGTCTCACCTGAGGCTTTACAGCTCTAGTACACCTAGTGCCGATCCGGCTGTGATCCACAAACAGAAGCTGGCCCAGTGGTTCAGCCACCTGCCCAATGAGGAGAAGCAGTTCGGGGGTTACTTCTCCCAGGAGACCATGCACATTGAGCCTCTGATCTTGGAGAGGAACCCGGGGGAGAGCGAGAACATTCGCACTTGGCTGAAGAATCCAAGTAGACGCCACCACCAGCCTTCCCTCATGATCGGGCAGCTCTTTGACCCCGTCCCAGGAGCGAGCCAGGAAATGGGGCTCAACGTGGTCCTGTATGGCGCCGTGGGGACAGGCAAAACCACTGTGGTCCGAAAGCTGATCCTGGATTGGTGTGCGGGGTCGGCGCTGCCCCAGTTCAAGCTGGTCATCCCATTCTCCTGCAAGGACCTCAGCCTTCAGACACGTCCCACCTCACTGCGCCACCTGGTGGGGAGAAAGTACCTGCACCTGCATAAAAACCCCTTGCTCAATGGAGTTGGACCAGAGGGCCGAGAAGTACTCTTCATCTTCAACGCAATGGAGCAGATGAAGCTGGACTTTGGCAGTGCCTCCACCGAGCTCTGCAGTGACCCGGATGAACCCCTCAGTGCTGAAACCATTGTGGTCAACCTGGTCCGGAAATACCTTCTGCCTGAGGCTAGCATTCTGGTCACCACCCGGCTCTCCGCCTTGGACAGCATCCCCAACAAGTACACAGACCGCTACTTTCAGATCTGTGGTTTTAGCAACCTTGACCAGCAGAAGGCGTACTTTACTAGCCGGTTGCTACATGGCAGCAGTGGGCCACCCAGCCAGGAGACAGAGACCCTGCTGGAGATGTTGTACCTCAATCTAGAACGTGAAAGCCAGCTGGCCGCTGCCTGCTTCCTGCCGTCCTACTGTTGGCTGACCTGTGCGACATTGCACTTCCTCCACTTCACTGATCCCCTAGCTCATATCCGCACCCTCACCGGCATCTTCACCAGCTTCCTGAGGCTTAACTTCAGTGGAGAGGTCCTGGAGGGTAGCAATAGGTTTGGAGGAGGGGGCGACAAAGTTGGACAGCAGAGCACCTCCCTGGTGCACCACGTGGTTCAGACAGTGGGCAAGCTGGCGTACGATGGAGTCACCAACAAGCGCACCTCCTTCTCGGAGAAGGAATTGGAGCAGTGGATTGGCGGCAAGACCAAGACAGATGAGGAGCTCCGACAGCTGGCGGTATTCCGCACAGACGTCCTGGATTTCTTCCTCGTGCCGTGCATGGAGACCTCCAAcctggaggaggggggaggggagacgCGCTACGTGTTCGCTGTCCCGGCCATGCAGGAGTACCTGGCTGCCCTGTATGTCGTGCTGGGGGAGAAGAAGACGGTGCTGGAGAAGGTGGGCAAGCAAGCCTCTGAGGCCATTGGGCAGGCCGGGGAAGACCTGACCACCCTGCTCAACATCCTTTCCAAATTCCTCCCCCTGAGGATCTTTGCCATCTTTAACCTAGTCAAGATGTTTCCCAGTCTGTACCACCGCATCATCGGGTACGGCAAGGGCCGGATTGCACGCACCATGACGGCCGAAATGTTCCGCACAGAGGACCAGTTCAACGAGGATGTGCTGGACCAGATTGAGCAGAGCCTGCTGGGGGTCCAGGGTCCAAAGCCAAAGGAGCGGCAGGAGCGGGAGTCCTTCGAGCTCTATCCTGTCTTTATGGGCGGCCTCCTGTCCTACGGGAACAGGGTGCTGCTGGACCAGCTGGGTTGCACCATTAAGAGCACGGTAGTGGCTCAGATCACCCGCTCCCTGGAGAAGCACATggtgaaagacagacagaagcaCCAGCCCCCAGAGGAAGTGATGGATCTGCTATTCTTCCTCTACGAGTTCCAGAACCCACACTTCACAGCCGAGGTGCTCTGTTCCCTCAAGTCCCTCAACCTGTCCACAGTGTGCATGACTCCCCTCAAGTGCTTCGTGCTGCGCTCTGTACTCAGCAGCGCACCCTCCAGGCACCTGCTGGAGGAGCTGAATCTTTCCTCCTGCCACCTGACCCAGGAGCTGCTGGAGATGCTGGGCCCAGTGCTGATGCGCACACGCAGCCTGAATCTCCAGTTTAACCGCCTGAGTGTAGAGTCCTGCACATACCTGAAAGACCTCCTGCTTGACAGCCACTGTTCCATTAGATCCTTAAAGCTGTGTGATAACGTTCTGACGGAGACAGGGGCGCACTGCCTGCTCGAGGCCCTCGCTGGGAACCGCTCTCTCCGGCACCTCTCCTTGATGCACACCGGCCTGGGGGACGGGGGCGCTGAGCAGCTGGCAGCACGGCTGCGGCAGAACAAAGGGCTGGAGGAGCTGAATGTGGCCTACAACTCCATAGGGGACAGTGCAGCCATCAAACTAGTGGATGCCTGCAGGGAACACCCCACTATCAACACTGTGCATTTGTACCTGAACCAGCTGAGCACGACCGGGAAGCAGTCCCTCTACTCGCGCGCGCAGCGGGGACAGGGGCCCACCAGCCGGGTGAAAGTGCTGGCCTCGGTGACGGAGGGTGCTGACCTGTCGGAGAACTGGCACCCTATCCTCAGCGTGATCCGGCAGCACTCCACGTCCTGGGAGCGCGAGCGCGTCCGCCAGCAGCTGCAGCACTTCCTGCAGGACCTGGAGGGGGGACGGCGCCAGACCCACAGCTGGCTGAAGAAGCTGCACTTCCGCCGGGTGGAGCGGGGCATCCAGCAGATGCTGCGTGAGCTGGACCAGAGCACCCCCTAATGGCTGCGGTTAGGAGCCTGGCTTATTGTAACCTCCCCACCTTTTCCCATGCACCTGTGTGTGAATTGCGTAGGATAGTGAAGGATCCTTCATTTTAAGGTACTGTCCACACTTACAGAGCTATGTTACCGGTGTCTTTTTTATTAGTTTAGAGTGAAGCAggggttttgttttagttgtttttgtttgtgttgggtttttttttcctcaattgATCATCCTGTGCTTCCCTACCTGGGCTTATCAGACACAGCTCGGAAGGGAGTCCTTGTGGCACCGGCCGTTCCAGGCTGTATTTCTCTCTGACACCATGGACTAAGAAAGTCAGTTCAGAGCACCTAGAGGAACTgccactgaaaaaaaagaacaaaaaaaactggaGCCAAAGAGCTTCCAGTCTTCCAGCACTTGAATGAAGATCAATAATACTCATAATTACAGTCTGATACAAGAGGTTCTTGtttaactgttgtttttttgcacacaGGTTAGGTCACATTCCTTACTCACATGTATTTGAACAAACGGGCAGAGATTTGCACTAGACTTTGCGCACTCTGATTGTAATAAACTAACGGTAAAACAGGGATGCTGTGAGATCGGAACAGCCTTTACTTGAACCTACATCAATATTTCCAGTGGGACTTGATGCATTTATCCAGTTGGAGATATATTAACttgatgtttgtgttttctgtacAACTTGTAAGAATGCATTACATATCCATAAATCTTATACCTTTTTTTGAACCAGATAAGCATGTTTGCACCAGAAACTACATATAAATGTTCATATGTTCTGTTCAGAGTATGTTAAGGTGCCAAGCACTTGATTTGCCTTACTATATACTTGAAGACTGGTGCTGACCTACATTCACCCTCAGGGTCTGGATACATTCCTGACTGCAAAGGGTCCCGAAAAGCCATAATAGCAATAGATAGACATATTGGGGGTTTCTTCACTCGGGTAATTCTAGCTTCCACAATCCAAACGCCTCACATGGGCCTGTATGGAAGTTGTCAGTACGGGTATTTGGAaatcatgtatgtgtgtagagTTGTTATGCTTTCAATGAGAGGAATTGTCCGTGTCTGCTTATTGTAGATGGTGTCtgttaccttttttgttttctttgttttctctatGCTAGTTTCATAGAAACTTCTATTTTTTATCATGTACTTTATCTGCCATGATTACTATGGTGCAGGAGGAGCTTTGTGATCTCTGATGTTGCTCCCAGCAAGACTGGTGCTTTCAGTGGACATGTATGGTCCTGTGTTTTTCTCGGACTGTGTCTGGTAACGTTGTGCAACGTTGTGGGACTTGCAATACAGGTCTTCCAACTAGGCATGAGTGaaagtgaggggaaaaaatcatAAGGTGGGCTTTATCAATAGTTGCATTGGACTAAAGGCAGTAAGTGGATATCGGAACAATCAGTGACtgaatgtattttagtttttagtactggtaataaaaaaatgtaatgaaatgttaTAAACTGCAGCCTGCTTCTAAATGAGGATAACTAGATACTGGGCTGACTTTAGagcagtataaaataaaatgtgcatacTGAAGCAacagtataaaacaatgtaaaccaATCTCGGAGGCTTTATGAAACAAAGCATTTTTCCCCTTGTGTGACAAGAaggaaatctttatttttaatcatcacAGTCAATTTGAATCTGACCCAGTTTTTTGAATAAGTTAAAAATACAGCTTTGTTTAAATGACGGCTCAGTTTTCTCTATGGATACAAGACAGCTTTGAGTCTCTTCTCTGTGCTGGGACTTGACCATGAACTAAAATTAAAGTAGTTTAAGCACATGTACACAAggtaatttacttttttttagtCCAAATGCAAATTGGGGATGTTTTAGCCGTATTTGAAATGGTCACTTTATTACAGTACTAGTGGTGAAGCAAGGTATCTTGGCGGGTCTCAGAACTCCACAGTATAATAGGTCAAGGCTGCCCTCTTGTAGCTAGAAGAGGCAAAGCTCTCCAACTCATcgattttgtgtgtatgttgtagTTGCACTCGGTACAGCAACATCAATACCAATAGGATTCTTCAACCAAACCGCATTATGATTGTTTGGTTTGTCTTTGGAGATGTTTggggaaataattaattttttggaatttgttaattttgaaaagtatGACGGACGCTAACCGAGACTTAATGTTGGTTTTAAGAAAATTAAGTTTGTATGTGGAAAATTAGTGGTTTTtgaaatgttgtatttgttgtttacATTCCTATCACACTGTTACGACCCCTTCTTGCAATGAATTATTGGCAACTCACATTGtgcttattatttaaaaaataataaaattgaaaaag
>TU10255
tattttagtttttagtactggtaataaaaaaatgtaatgaaatgttaTAAACTGCAGCCTGCTTCTAAATGAGGATAACTAGATACTGGGCTGACTTTAGagcagtataaaataaaatgtgcatacTGAAGCAacagtataaaacaatgtaaaccaATCTCGGAGGCTTTATGAAACAAAGCATTTTTCCCCTTGTGTGACAAGAaggaaatctttatttttaatcatcacAGTCAATTTGAATCTGACCCAGTTTTTTGAATAAGTTAAAAATACAGCTTTGTTTAAATGACGGCTCAGTTTTCTCTATGGATACAAGACAGCTTTGAGTCTCTTCTCTGTGCTGGGACTTGACCATGAACTAAAATTAAAGTAGTTTAAGCACATGTACACAAggtaatttacttttttttagtCCAAATGCAAATTGGGGATGTTTTAGCCGTATTTGAAATGGTCACTTTATTACAGTACTAGTGGTGAAGCAAGGTATCTTGGCGGGTCTCAGAACTCCACAGTATAATAGGTCAAGGCTGCCCTCTTGTAGCTAGAAGAGGCAAAGCTCTCCAACTCATcgattttgtgtgtatgttgtagTTGCACTCGGTACAGCAACATCAATACCAATAGGATTCTTCAACCAAACCGCATTATGATTGTTTGGTTTGTCTTTGGAGATGTTTggggaaataattaattttttggaatttgttaattttgaaaagtatGACGGACGCTAACCGAGACTTAATGTTGGTTTTAAGAAAATTAAGTTTGTATGTGGAAAATTAGTGGTTTTtgaaatgttgtatttgttgtttacATTCCTATCACACTGTTACGACCCCTTCTTGCAATGAATTATTGGCAACTCACATTGtgcttattatttaaaaaa

Function

GO: NA

KEGG:

id description
K12653 NLRX1; NLR family member X1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004449 True 5480 mRNA 0.50 9 49938552 49951533
TU10255 False 898 lncRNA 0.34 1 49950619 49951516

Neighbor

gene id symbol gene type direction distance location
AMCG00004451 abcg4,abcg4a,LOC107597525,LOC108429752,LOC107722792,LOC107677424,LOC107587350 coding upstream 31701 49897636 ~ 49906851 (+)
AMCG00004454 NA coding upstream 45541 49883386 ~ 49893011 (+)
AMCG00004443 NA coding upstream 120734 49815273 ~ 49817818 (+)
AMCG00004441 dpagt1 coding upstream 134148 49797543 ~ 49804404 (+)
AMCG00004437 NA coding upstream 166299 49757121 ~ 49772253 (+)
AMCG00004452 NA coding downstream 607 49952140 ~ 49963716 (+)
AMCG00004450 ube4a coding downstream 16941 49968474 ~ 49983158 (+)
AMCG00004448 LOC108233819,LOC107098727 coding downstream 33194 49984727 ~ 49987491 (+)
AMCG00004453 kmt2a coding downstream 37742 49989275 ~ 49989664 (+)
AMCG00004455 LOC107601691 coding downstream 52777 50004310 ~ 50032342 (+)
G8188 NA non-coding upstream 352457 49582118 ~ 49586095 (+)
G8167 NA non-coding upstream 502801 49434043 ~ 49435751 (+)
G8140 NA non-coding upstream 690518 49246488 ~ 49248034 (+)
G8111 NA non-coding upstream 909369 49024156 ~ 49029183 (+)
G8103 NA non-coding upstream 978721 48955967 ~ 48959831 (+)
G8356 NA non-coding downstream 114902 50066435 ~ 50068081 (+)
G8371 NA non-coding downstream 186096 50137629 ~ 50139705 (+)
G8372 cbl,LOC107601723 non-coding downstream 191772 50143305 ~ 50144990 (+)
G8373 NA non-coding downstream 193838 50145371 ~ 50145823 (+)
G8374 NA non-coding downstream 196343 50147876 ~ 50148195 (+)
AMCG00004442 NA other upstream 124528 49806361 ~ 49814024 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 619717 49298736 ~ 49318835 (+)
AMCG00004424 NA other upstream 878497 49043590 ~ 49060055 (+)
AMCG00004421 NA other upstream 912197 48897117 ~ 49026355 (+)
G8099 NA other upstream 1004457 48932450 ~ 48934095 (+)
G8377 NA other downstream 199731 50151264 ~ 50157719 (+)
AMCG00004463 NA other downstream 285144 50236677 ~ 50243043 (+)
AMCG00004477 NA other downstream 789855 50741388 ~ 50753432 (+)
G8606 NA other downstream 1163408 51114941 ~ 51115262 (+)
AMCG00004501 NA other downstream 1988016 51939549 ~ 51946818 (+)

Expression


Co-expression Network