AMCG00004451 (abcg4,abcg4a,LOC107597525,LOC108429752,LOC107722792,LOC107677424,LOC107587350)


Basic Information

Item Value
gene id AMCG00004451
gene name abcg4,abcg4a,LOC107597525,LOC108429752,LOC107722792,LOC107677424,LOC107587350
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49897636 ~ 49906851 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004451
GAGACGGGGATGAAGGGACAGATCCTGGTGAACGGGAAGCAGCGGGACCTGCGCACCTTCAGGAAGATGTCCTGTTACATCATGCAGGATGATATGCTGCTGCCACACCTCACCACGCTGGAGGCCATGATGGTTTCCGCCAACCTGAAGCTGAATGAGAGCATGGATGTGAAGAAAGAGTTGGTGAACGAGATCCTGACAgcgctggggctgctggagtgCGCCCACACCCGCACCCTCTGCCTGTCGGGGGGGCAGTGTAAACGACTGGCCATCGCGCTGGAACTGGTCAACAACCCCCCCGTTATGTTCTTCGATGAGCCCACAAGtggtCTAGACAGTGCATCTTGTTTCCAGGTGGTATCTCTGATGAAGTCCCTGGCTCAGGGTGGGAGGACAATCATCTGCACAATCCACCAGCCCAGCGCCAAGCTGTTCGAGATGTTCGACAAGCTGTACATCCTGAGTCAAGGCCAGTGCATTTTCAAAGGACCAGTTCCACACCTCATCCCCTATTTGAAGAACCTGGGTCTCCACTGTCCCACATACCACAACCCGGCAGATTTCAtaaTCGAGGTGGCATCAGGGGAGTATGGAGACCTGAACCCTGTGCTGTTTGAGGCTGACTCGGAGCACATAGAGAGCCACACGTTCGCCACCAGCACCCTGACCCAGTTCTGCATCCTCTTCAAGAGGACCTTCATCACGATCTGCAGAGACACGGTGTTGACCCACCTAAGGGTGATGTCACACATCTGTATCGGGGTGCTGATCGGGCTGCTGTACCTCAACATTGGGAACGATGCCAGCAAGGTCTTTAACAACACGGGATTCCTCTTCTTCTCCATGCTCTTCCTCATGTTTGCTGCGCTCATGCCCACTGTGCTGACCTTTCCTCTAGAGATGTCTGTGTTCCTCAGAGAACATCTCAACTACTGGTATAGCCTGAAGGCCTACTACTTGGCCAAGACCATGGCAGACATTCCCTTCCAGGTCATCTGTCCCATCATATACTGCAGTATCGTGTACTGGATGACTGAGCAGCCCCCCGAGGCTGGGCGCTACCTGCTCTTCATGGCTCTGTCCACCTCCACTGCCCTGGTGGCCCAGTCTCTGGGGCTCCTGATCGGGGCAGCCTCCACCTCGCTGCAGGTTGCCACTTTCATAGGGCCAGTCACCGCGATCCCTGTCCTGCTGTTCTCTGGCTTCTTTGTCAATTTTGACACAATTCCCAAATACCTGCAGTGGAGCTCCTATGTTTCTTATGTCAGGTACGGGTTCGAGGGGGTGATCCTGTCAATCTACGGGATGAACCGGTCGGAGCTGGAGTGTCCCGGGAAGGTGTGCAAGTTCCAAAAGCCGGAGGAGGTTCTTCAGATGTTAGATGTGGAGGATGCCAAGCTGTACCTGGACTTTATCGTTTTGGGAATCTTCTTCCTTGTCCTGCGGCTCGCCACCTACTTGGTTCTGCGCTACAAGGTGAAGTCGGAGCGATAG

Function

symbol description
abcg4a Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be involved in cholesterol efflux. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ABCG4 (ATP binding cassette subfamily G member 4).
abcg4 Enables protein heterodimerization activity and protein homodimerization activity. Involved in cholesterol efflux. Located in plasma membrane.

NR:

description
PREDICTED: ATP-binding cassette sub-family G member 4-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05680 ABCG4; ATP-binding cassette, subfamily G (WHITE), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004451 True 1497 mRNA 0.55 12 49897636 49906851

Neighbor

gene id symbol gene type direction distance location
AMCG00004454 NA coding upstream 4625 49883386 ~ 49893011 (+)
AMCG00004443 NA coding upstream 79818 49815273 ~ 49817818 (+)
AMCG00004441 dpagt1 coding upstream 93232 49797543 ~ 49804404 (+)
AMCG00004437 NA coding upstream 125383 49757121 ~ 49772253 (+)
AMCG00004434 NA coding upstream 266622 49608879 ~ 49631014 (+)
AMCG00004452 NA coding downstream 45289 49952140 ~ 49963716 (+)
AMCG00004450 ube4a coding downstream 61623 49968474 ~ 49983158 (+)
AMCG00004448 LOC108233819,LOC107098727 coding downstream 77876 49984727 ~ 49987491 (+)
AMCG00004453 kmt2a coding downstream 82424 49989275 ~ 49989664 (+)
AMCG00004455 LOC107601691 coding downstream 97459 50004310 ~ 50032342 (+)
G8188 NA non-coding upstream 311541 49582118 ~ 49586095 (+)
G8167 NA non-coding upstream 461885 49434043 ~ 49435751 (+)
G8140 NA non-coding upstream 649602 49246488 ~ 49248034 (+)
G8111 NA non-coding upstream 868453 49024156 ~ 49029183 (+)
G8103 NA non-coding upstream 937805 48955967 ~ 48959831 (+)
G8356 NA non-coding downstream 159584 50066435 ~ 50068081 (+)
G8371 NA non-coding downstream 230778 50137629 ~ 50139705 (+)
G8372 cbl,LOC107601723 non-coding downstream 236454 50143305 ~ 50144990 (+)
G8373 NA non-coding downstream 238520 50145371 ~ 50145823 (+)
G8374 NA non-coding downstream 241025 50147876 ~ 50148195 (+)
AMCG00004442 NA other upstream 83612 49806361 ~ 49814024 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 578801 49298736 ~ 49318835 (+)
AMCG00004424 NA other upstream 837581 49043590 ~ 49060055 (+)
AMCG00004421 NA other upstream 871281 48897117 ~ 49026355 (+)
AMCG00004449 NA other downstream 31701 49938552 ~ 49951533 (+)
G8377 NA other downstream 244413 50151264 ~ 50157719 (+)
AMCG00004463 NA other downstream 329826 50236677 ~ 50243043 (+)
AMCG00004477 NA other downstream 834537 50741388 ~ 50753432 (+)
G8606 NA other downstream 1208090 51114941 ~ 51115262 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location