AMCG00004452


Basic Information

Item Value
gene id AMCG00004452
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49952140 ~ 49963716 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004452
CAAGTGTGTTCAGCTGGGCACCTTCACTGTTTAAATCTTTGCGACTGACCGATATGCAACGTTTCAGATTACATTCCACCGCAGGGTCGATCGGGAAACTCCACTGAAGGAGACCTGTATGGCGATATCTGCTGCAATGCACGGTTGCAAAGACTTCTTGGGGTAAGGCATGGGCATTGGTGTCCAGTGCGCCTGGGAGTTGGAGCTCAGTGAGGGAACGAGGGACAAGTTTCTCCAGCTAGGATACAGTGTCTCAGACTCcagattaaacattaaactggtAGAGATGAGAGGAGGAGCCTGACTTTATACTGCAGACAACGGTGCAGATAAGTGTCTCTTTATATCCCTCTCGTTATCCCTGTGGCGTAAACCTTGAACCCCTTCCGTCTTCCTGTGGAATCGCCGTCCCGACTCAGCGGAACGGCATGAAACAGAGCACAGTACTGGAAGATGCCATGGAGTTGACACAaaaGTTCATTTTTAATCCTAAGGAGGGGATCGATAACCCAGCCCTGGTGATCACTGATGACTCAGAGGCGGAGTGGAAGCCCGTGCCGCGGCTGTGCCAAATGAAGCGTGAGGAGGGGGAGAGCTTTGGCTTTTACCTGCGCGTGGAGCTGGGCTGCCATGGGCATGTGATCAGAGAGGTGGATCCATGGAGCGTGGCTGAGCGCAGTGGACTGAGGGATGGAGATCGTCTCCTGGAGATCAATGACCACTATGTGCATGACTTGGAGCACTACCAGATCGTGCAGAAGATCCTGGCGAGTGGGACACAGGTTGTGTTTCTGGTGCTGGAGGCCAGCGAGTACGAGCGGGCATTGGATGAAGGTCTCAACCTGCGAGGGCTGGCACAGCAACACCGCGGTGAGAAATGCGCCCAGCCCCGGCTCTGCCACATCCCCCGGAGCCACAGCGCCGGACTGGGCTTCACCGTGTCTGCAGTGGAGGGAGTAAAGGGCAAGTTCTATGTGAGCACAACAGCGAGCGGAGGTCCAGCAGAGAAGGCCGGGGTGCAGCCGGGAGACCGGCTGATCTGGATAAATGGAACCATGGTGTCAGAGCTCACTCATTCCGCACTCAGCAAGATGATTAAGAGGTGCGGAGACCATGTGACAGTGCTGGTGATTGACAGTGTGAGTGAGCAGATCTACACCCGGCGCCGACTGGCCATCCTCCCTGCCATGGCGGGGACACACAACCTGCCCCACCGTCCCCGAAAGCTGCACCTGGTTCAGGCACCCGAGGGCTACGGCTTCCTGCTGCGCCAGGAGAGAATGCCATCGGGGCGCATAGCTCACTTCCTGCGGGAGATCGACCCCGGCAGCCCGGCGGAGAGCGCAGGAATGCAGGATGGCGACCAGCTGCTGGCGGTGAATGGTCACTTTGTGCAGGAGCTGGAGCACGAGGACATCGTGAGCAGAGTGCGCAAGAGCGGGTCGCAGGTCACCCTCATCGCCATCCACAGCCAGGGCAACGACTACTACACACGGTTGGGTCTGTCTCCCCTGCTGTTCTTTGAGGATGACCCCCCTAAGAAGGAGAAGGATAGGGCAGCCCCCTTGCCTATTCTCGCATCGCCACCAGCTGGCCTTCCTCACGAAGTGCAGCCTGGCTACCCTGTTCCTCGGCTCTGTCAACTGAAGAAAGGCCCCAACGGCTTCGGTGTGTTGGTGCTTGGCTATAACAGCTCTGCCCTGCAGGTGGCGCCAGGGGGCTCAGCAGAACGGGCTGGGCTCCGAGAGGGAGACGTGGTGGTGGAGGTTAACAGACACAACGTGGAGGAGGAGTTTTTCGAGGGCGTGGTGATGAGGATGAGAGAGGGCGGGCAGGTCCTCAGTGTGCTGGTGCTCGACAGGCAGGGGTACGAGCAGCTGAGACAGAGCAGGACGCCCATCTCTGCCAGCCTTGCACTCAGGACACAA

Function

GO: NA

KEGG:

id description
K24059 PDZD3; PDZ domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004452 True 1928 mRNA 0.58 10 49952140 49963716

Neighbor

gene id symbol gene type direction distance location
AMCG00004451 abcg4,abcg4a,LOC107597525,LOC108429752,LOC107722792,LOC107677424,LOC107587350 coding upstream 45289 49897636 ~ 49906851 (+)
AMCG00004454 NA coding upstream 59129 49883386 ~ 49893011 (+)
AMCG00004443 NA coding upstream 134322 49815273 ~ 49817818 (+)
AMCG00004441 dpagt1 coding upstream 147736 49797543 ~ 49804404 (+)
AMCG00004437 NA coding upstream 179887 49757121 ~ 49772253 (+)
AMCG00004450 ube4a coding downstream 4758 49968474 ~ 49983158 (+)
AMCG00004448 LOC108233819,LOC107098727 coding downstream 21011 49984727 ~ 49987491 (+)
AMCG00004453 kmt2a coding downstream 25559 49989275 ~ 49989664 (+)
AMCG00004455 LOC107601691 coding downstream 40594 50004310 ~ 50032342 (+)
AMCG00004458 NA coding downstream 157713 50121429 ~ 50135834 (+)
G8188 NA non-coding upstream 366045 49582118 ~ 49586095 (+)
G8167 NA non-coding upstream 516389 49434043 ~ 49435751 (+)
G8140 NA non-coding upstream 704106 49246488 ~ 49248034 (+)
G8111 NA non-coding upstream 922957 49024156 ~ 49029183 (+)
G8103 NA non-coding upstream 992309 48955967 ~ 48959831 (+)
G8356 NA non-coding downstream 102719 50066435 ~ 50068081 (+)
G8371 NA non-coding downstream 173913 50137629 ~ 50139705 (+)
G8372 cbl,LOC107601723 non-coding downstream 179589 50143305 ~ 50144990 (+)
G8373 NA non-coding downstream 181655 50145371 ~ 50145823 (+)
G8374 NA non-coding downstream 184160 50147876 ~ 50148195 (+)
AMCG00004449 NA other upstream 607 49938552 ~ 49951533 (+)
AMCG00004442 NA other upstream 138116 49806361 ~ 49814024 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other upstream 633305 49298736 ~ 49318835 (+)
AMCG00004424 NA other upstream 892085 49043590 ~ 49060055 (+)
AMCG00004421 NA other upstream 925785 48897117 ~ 49026355 (+)
G8377 NA other downstream 187548 50151264 ~ 50157719 (+)
AMCG00004463 NA other downstream 272961 50236677 ~ 50243043 (+)
AMCG00004477 NA other downstream 777672 50741388 ~ 50753432 (+)
G8606 NA other downstream 1151225 51114941 ~ 51115262 (+)
AMCG00004501 NA other downstream 1975833 51939549 ~ 51946818 (+)

Expression


Co-expression Network