AMCG00004546 (dixdc1,LOC107715327,LOC107693513)


Basic Information

Item Value
gene id AMCG00004546
gene name dixdc1,LOC107715327,LOC107693513
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53259179 ~ 53270254 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004546
ctctctctgtccagtcTTAGCTCTCCCAGCCCCGTGCACACACCCAAAGGAGAAGCTGTCATCGGCCAATCAGAAGACAAGGATGATGACGTCTTCCAATCAGAGGAGACGCAGAGTAAATCAGAAGAGGTGGTGAAGACCCCCGTGGGTGGGCAGTGGGCTGCAGGGCCTCCTGGGATAGGCTCGGGGGACACGTGGGAGGACCAACTCTtggagcagcaggagcagctggaaggggagctggaggaggccagAAGGATGATCTCCAGTCTGCAGGCCCTGCTGCTGCACGGCTCACTACCTGAGGACGAACAGGAGGCCTCTCTCAGCCTGGGGGGAGAGGGGGCCGAGAACGCAGAGCAGCAACTGaTTATAATCCGCAGTCGTCTGGATCAGAGCATGGAGGAGGCTCAGGACCTGAAGAAAGAGCTGTTGAGATATAAACAGGAAGCCCGGAATCTGCAGGGGGTCAAGgatGCACTGCAGCAGCGGATGTCCGTGCAGGAGAGCGCCGTGCTGCAGCTCAAACAGGAGCTCCTGCGGGCCAGCATGGCCAGGGACGAGCTGCACGGACACAACGCGGAGCTGCAGAGAAAGCTGGAGGAACGAAGCCGACTCCTGTCCGACTACAAGACTGACTTGCAGAGGgagctggagcacaaggacagTGTCCTGCAGGAGCTGATGAGTCGCGAACTGGACGAGCTCTCCGGCTCTACAGGGCGGTCTCAGAATAACGGTTACCCACATCCCCCAGGGGCAGGTGCCCCACTGGCTGCCACACACAGAGGGACGGAGGAGCTGCAGCTCGTTCGCGACGCTCTGCGCAGTCTGAGGAACAGCTTCAGCGGCCACGACCCCCAGCACCACACGCTGGACACGCTGGAGCAAGGGGTGGCCAGCCTCATGGACCGCCTGCACGCCCTGGACTCGCAGCGCCGCCACGACAAGAGGAGCCGAGGAAAGTCTCCAGGCCGAAGAGCCACTCACTCGGACCGGGACTCCTGGCCCCCCAGCACCAAGGTGGCTCACTCCCACAGCAGCCCTGTGCTCAGTAGCTCTGTCTCCACCAAAGTGCTGTACTTCACTGACCGCTCCCTGACGCCTTTCATGGTGAACATCCCCAAGAGgcTGGGCGAGGTCACGCTGAGAGACTTCAAGTCGGCTGTGGACAGAGAGGGCAGCTACAGATACCACTTTAAAGCCCTGGACCCTGAGTTCGGCACAGTGAAAGAAGAGGTGTTCCACGACGAGGCCGTGGTGCCGGGCTGGGAGGGGAAGATCGTGGCTTGGGTGGAGGAGGACCACGGGGAGGGCAGGTAGACCGGGCGGCGCAGGCGGCCACACGGCACCCTGCCAGTCAGCCAGCGCCCACCGTAGCCCACGATACATAGCCCCGCCAGTGCCGAGTTGACTTGGGCCGCAGGAGGTCACACGCGGGGCACATAAACGCATAAACACACGGGGCAGCTGGGAAGGATCTGGTGTGGGCTCCTCCGTGTGCCGGCGGTGGCCCTCCTGAGTACCGGTCCTTCTAACAACTTACTGTAATATACCTTGGTGGTAAGAGGGGGGGATGATCACGGTTATGCGTAGGGGTGCCTTGCAGAACATGTAAATATTCCATGGCAAACTATAATGAGGGGACAGACCTGGTGGACAGCAAAGAATCAGAGCCACTGTAGCTTCCCACCCAATGTGGGACAGAACCAAAGCCTGGGGTTGAGGTTAACAACAGGGTGAGGGATTGGAAGGCGCCTCAGATACGTGTGATGCTGTTGCACAGGGCTCAGCCCAGCTCTGCACTGACTGGGAGGCGCTGGTGTAAAGACGCCAACCCTAGAGAAGCCTTACAGGGCCTTGGGGGTCTAGGCTGAGACCGGGGAGGGGGATTAATGCAGCCCTCATCGCTGGAGCACTGCGGAGTCGTGAGTTTGTGTCCCCAGAGGGACTGCAGTCCAAACCAGCAGTGTTCCCATGTGTGGGGTTTATTGAATGCAGATGGAGCTGCTGATGTTtacacttatttatatatatatagaatgggGCAATTACGCCTGGCAAATGTATACAggaagagagaaatggagagactACACTTTCTTATTCCACGTTTGTGCCAAATCGTGTACAGATTTTACAGCTGACCCTTTTCTGGGATTAGTCTTTGTTAACCTTCATGCCGTACTTGGTGGCaactttgtattgttcttttttatgtCCCTTTCCTCCTTGTTGACTGATTGTGGCAAAACCCCACTAACATATCAGTGACATTCCTAGACTCTTAGCCTTCTGCTTCATATCAGCAgccccccccctgccccccacagCCTGATAAACTGgcaaagtattttctttaaagattgTATAATGTTGACAACAATCATCGAGAAACCGAATTAGTGCTGAGAATCTTAGATCCCAAACTCGGGCGAGAGACACAGGGTTTAGAAGAAGAATCCCAGGTAATGTTCTGCTTGGGTTCCTACAAACGAGGCCCCAGAGGGAAAGACTTGGGATCTGAAGAGGTTCTTAGCTCAGGGCTGGAATTGAGACTTCCCAATTGCCTTGCACTGTGATCCATGTCAGGTTTCCCAGTGTGCAGGGCTCTGACGTGCTTGGTATCTCACACCAGTTCGGAGCATGTTTTGTGCCTAGACAGACGTGTCTTTCGACATGATGGGCATTTCTGCCCGCTGCTTTGGCACAGTTTGTTCATGAGAACCCGGAAAAGTGTGCTTGCCCTAAATGGATCACAATGCTCTGCGATATAAGTCCGAATTCCTGCCTCCGTTTCAATCCTGTCACATCGTGTAACATATCGGCCTGCTGAAATGCTCTGCGCAGGTACGGGTGTtcttgtttattaataaatatgtaaattatgctGTTTTGTCATTAAAAAGGAATGGGAGTAACCAATGGAAAGCAGCCACACTTGACAGTGATGGACTAGTCTCATAATTGCCTTCAGTGAAGGACCAACTGCCGCACTGCGCTGTTAAGTGTTCAGACAGACCTATGAGATCAGTTGTAATTTACTTGTTTGTATCCTGTGTGATAAAATTTACTCGTACAGATGCGTTCTggtaagctttttttttttaaaggtttccAACAGtggcattttaaactgaaacaaactccaATACACTGAAACAGACACCAGGTTTTACTCAAACTCATCTATGCAGCTGTGGTCTGTGATGGGGTGATATAATGATACTTCACTGAGATTTTctaatgttttgtcttttctccTCATGAAGCAGTTGAGGgggtgatttgtattttttttttcaaggaaaACTAATCAAAACAAGTGCAGTAATTCTCTTTAAACACATTGAGGATGGTAGTCCAGTCGTGCCCAGTTGGAGTTTGTTGCATCCGCTGTTTAACTGCTGCTTTGGatggctttttaattttatatttgggGATTTATTTCTCTTGTGCTGGGTGAGAAACTGCTGtgagaggaggagagtgagGGAACTATGACCTATGaaagtgagagagtgtgtgagagagaggatttaaattattattttgattcagTTTCCTGTGGAAtcacatttataatgtttttatctgttcctgtaaatagttttatatattgtaaaccTATGGCACGTTTTAAGTTTgacagttttgttgtttgtttctttgtttttttctggaacCGGTACAtgcttttaaaggaaaaataaaattggaacTGTACCTGTATTCTGCCTGCGTTTGAACGATCAGCGTTTTTCATCTTAAAATACTGTACCCTAATCTGTGCAGTGTCCCTTTAGATCATTTTCCTcttcatttacaaatgtaacaaCCTTCTTTAAGTTTATAGAGGAAGTGCTGCCCTGCAGTAACACTTTAATTAAACCGTAAATCACCATTATTTCCATTGCTTTTATGGCTGTATGCTGTTGAAATTGTAGTGAAGACACACTGCCAGGGACACTGGACAGATAGGGAGGACACCACTCTGGGACAACAAGagaactgtgtgtttgtgggtggggggggctaaCCATGAACTGATGAACCATGAACcatgatttgttttgaaaaaactaaaccttTGTACTTTCTTTCCAAACAGGCTTTTGATATGTCTTGTTGCAGACTCAAACTGGCTTaatgcagtttttgttgttttttaaaagtataaGTCTTGTTCATCGTTGCCATTTAAAAGTATGTACTGGCTCTGTCTCAGTGCAGTCCCAGCGTTTTAATCAATATGCCTGTGTTTCAGCTGCTACATCAGGTCTTGTATTGTTCACATCTTATTCTAGGCTGTTCCTAACCAGTCACTGTACACTGGAGACCTTAATTGGTATCAGAAAGGACACCCTGTGGCCAGTCTACGCTGGGCATTAATTACACACAAGTaattgctttgcattttattctcgGGCAGCTTCTGAAAGGCTCAGTATTTCAAGCAATTTGGCAGTGTCACACAGCCTTTAGATCTGCAGAGATTAGGTCGGCTAAATAAGCCCAGCGTGCTATTTTCTCCTGTTCGATGTGTATTTCCTGAGGAAAATATTGTCTCAGTCAAAGAGCAGACATTACGATAACTGAATTACGCATTGGCATACAGTTGGTGCCGCGAGTGTTAGTATTACAGCCATAGACTGCTGTTGTTGCTGGTTTCCAGCTCTCCTGGTTTCCCTGCATCATTAGGCAACATTCACGTTTGTCTTCAGACTTGTTCACAATAGGGCCAGGCTGCACACAGGCCCACGACTGGGGCCTGAGGCAGCCTGGAGGCTACAGGgggaattgctttttttttaacctgttgaAGACCTGAGAGACATCCTAAAAGTCTTAAGAGACACCTGCAGCATTTATGCCGCGAGGGACCAAAGTTTGATAATCCCTCCTGCAAAGTATAATGTAATACAGTCcaagtgagagacagacactgaTGAGGCACTATTTTTGAGGGGCTGGTGCAATACTGTTCCAGCAGGGAGACTGGCCACATGTGGGAGTATTACAGGGTGGCGGTACAAACAGGGTCAGTGTATTACGGGAACATCCAGTAATCTGTGGTTATGGTAATGTCTGCTGTAGCATTGCTGAGGTGTTTGCAATGGCTGGGCTTCCTTCACTGTATTGAGGGTgatgagggtgggggggtggtgtcCATATACCAAAGAATACTGGTGTTATAGATGTGGTGATGCTGGACTGTGCAGCTTGACCTCGCCTTCCTTCTgtgtgagaaaacaaacaaagtaaaagaGAAGCAAACATTCCCTTTTCCTGCTTTCAACAATAAACTCTTCTCCTTTTGGAAAAGC
>TU11164
AGCTCTCCGGCTCTACAGGGCGGTCTCAGAATAACGGTTACCCACATCCCCCAGGGGCAGGTGCCCCACTGGCTGCCACACACAGAGGGACGGAGGAGCTGCAGCTCGTTCGCGACGCTCTGCGCAGTCTGAGGAACAGCTTCAGCGGCCACGACCCCCAGCACCACACGCTGGACACGCTGGAGCAAGGGGTGGCCAGCCTCATGGACCGCCTGCACGCCCTGGACTCGCAGCGCCGCCACGACAAGAGGAGCCGAGGAAAGTCTCCAGGCCGAAGAGCCACTCACTCGGACCGGGACTCCTGGCCCCCCAGCACCAAGGTGGCTCACTCCCACAGCAGCCCTGTGCTCAGTAGCTCTGTCTCCACCAAAGTGCTGTACTTCACTGACCGCTCCCTGACGCCTTTCATGGTGAACATCCCCAAGAGgcTGGGCGAGGTCACGCTGAGAGACTTCAAGTCGGCTGTGGACAGAGAGGGCAGCTACAGATACCACTTTAAAGCCCTGGACCCTGAGTTCGGCACAGTGAAAGAAGAGGTGTTCCACGACGAGGCCGTGGTGCCGGGCTGGGAGGGGAAGATCGTGGCTTGGGTGGAGGAGGACCACGGGGAGGGCAGGTAGACCGGGCGGCGCAGGCGGCCACACGGCACCCTGCCAGTCAGCCAGCGCCCACCGTAGCCCACGATACATAGCCCCGCCAGTGCCGAGTTGACTTGGGCCGCAGGAGGTCACACGCGGGGCACATAAACGCATAAACACACGGGGCAGCTGGGAAGGATCTGGTGTGGGCTCCTCCGTGTGCCGGCGGTGGCCCTCCTGAGTACCGGTCCTTCTAACAACTTACTGTAATATACCTTGGTGGTAAGAGGGGGGGATGATCACGGTTATGCGTAGGGGTGCCTTGCAGAACATGTAAATATTCCATGGCAAACTATAATGAGGGGACAGACCTGGTGGACAGCAAAGAATCAGAGCCACTGTAGCTTCCCACCCAATGTGGGACAGAACCAAAGCCTGGGGTTGAGGTTAACAACAGGGTGAGGGATTGGAAGGCGCCTCAGATACGTGTGATGCTGTTGCACAGGGCTCAGCCCAGCTCTGCACTGACTGGGAGGCGCTGGTGTAAAGACGCCAACCCTAGAGAAGCCTTACAGGGCCTTGGGGGTCTAGGCTGAGACCGGGGAGGGGGATTAATGCAGCCCTCATCGCTGGAGCACTGCGGAGTCGTGAGTTTGTGTCCCCAGAGGGACTGCAGTCCAAACCAGCAGTGTTCCCATGTGTGGGGTTTATTGAATGCAGATGGAGCTGCTGATGTTtacacttatttatatatatatagaatgggGCAATTACGCCTGGCAAATGTATACAggaagagagaaatggagagactACACTTTCTTATTCCACGTTTGTGCCAAATCGTGTACAGATTTTACAGCTGACCCTTTTCTGGGATTAGTCTTTGTTAACCTTCATGCCGTACTTGGTGGCaactttgtattgttcttttttatgtCCCTTTCCTCCTTGTTGACTGATTGTGGCAAAACCCCACTAACATATCAGTGACATTCCTAGACTCTTAGCCTTCTGCTTCATATCAGCAgccccccccctgccccccacagCCTGATAAACTGgcaaagtattttctttaaagattgTATAATGTTGACAACAATCATCGAGAAACCGAATTAGTGCTGAGAATCTTAGATCCCAAACTCGGGCGAGAGACACAGGGTTTAGAAGAAGAATCCCAGGTAATGTTCTGCTTGGGTTCCTACAAACGAGGCCCCAGAGGGAAAGACTTGGGATCTGAAGAGGTTCTTAGCTCAGGGCTGGAATTGAGACTTCCCAATTGCCTTGCACTGTGATCCATGTCAGGTTTCCCAGTGTGCAGGGCTCTGACGTGCTTGGTATCTCACACCAGTTCGGAGCATGTTTTGTGCCTAGACAGACGTGTCTTTCGACATGATGGGCATTTCTGCCCGCTGCTTTGGCACAGTTTGTTCATGAGAACCCGGAAAAGTGTGCTTGCCCTAAATGGATCACAATGCTCTGCGATATAAGTCCGAATTCCTGCCTCCGTTTCAATCCTGTCACATCGTGTAACATATCGGCCTGCTGAAATGCTCTGCGCAGGTACGGGTGTtcttgtttattaataaatatgtaaattatgctGTTTTGTCATTAAAAAGGAATGGGAGTAACCAATGGAAAGCAGCCACACTTGACAGTGATGGACTAGTCTCATAATTGCCTTCAGTGAAGGACCAACTGCCGCACTGCGCTGTTAAGTGTTCAGACAGACCTATGAGATCAGTTGTAATTTACTTGTTTGTATCCTGTGTGATAAAATTTACTCGTACAGATGCGTTCTggtaagctttttttttttaaaggtttccAACAGtggcattttaaactgaaacaaactccaATACACTGAAACAGACACCAGGTTTTACTCAAACTCATCTATGCAGCTGTGGTCTGTGATGGGGTGATATAATGATACTTCACTGAGATTTTctaatgttttgtcttttctccTCATGAAGCAGTTGAGGgggtgatttgtattttttttttcaaggaaaACTAATCAAAACAAGTGCAGTAATTCTCTTTAAACACATTGAGGATGGTAGTCCAGTCGTGCCCAGTTGGAGTTTGTTGCATCCGCTGTTTAACTGCTGCTTTGGatggctttttaattttatatttgggGATTTATTTCTCTTGTGCTGGGTGAGAAACTGCTGtgagaggaggagagtgagGGAACTATGACCTATGaaagtgagagagtgtgtgagagagaggatttaaattattattttgattcagTTTCCTGTGGAAtcacatttataatgtttttatctgttcctgtaaatagttttatatattgtaaaccTATGGCACGTTTTAAGTTTgacagttttgttgtttgtttctttgtttttttctggaacCGGTACAtgcttttaaaggaaaaataaaattggaacTGTACCTGTATTCTGCCTGCGTTTGAACGATCAGCGTTTTTCATCTTAAAATACTGTACCCTAATCTGTGCAGTGTCCCTTTAGATCATTTTCCTcttcatttacaaatgtaacaaCCTTCTTTAAGTTTATAGAGGAAGTGCTGCCCTGCAGTAACACTTTAATTAAACCGTAAATCACCATTATTTCCATTGCTTTTATGGCTGTATGCTGTTGAAATTGTAGTGAAGACACACTGCCAGGGACACTGGACAGATAGGGAGGACACCACTCTGGGACAACAAGagaactgtgtgtttgtgggtggggggggctaaCCATGAACTGATGAACCATGAACcatgatttgttttgaaaaaactaaaccttTGTACTTTCTTTCCAAACAGGCTTTTGATATGTCTTGTTGCAGACTCAAACTGGCTTaatgcagtttttgttgttttttaaaagtataaGTCTTGTTCATCGTTGCCATTTAAAAGTATGTACTGGCTCTGTCTCAGTGCAGTCCCAGCGTTTTAATCAATATGCCTGTGTTTCAGCTGCTACATCAGGTCTTGTATTGTTCACATCTTATTCTAGGCTGTTCCTAACCAGTCACTGTACACTGGAGACCTTAATTGGTATCAGAAAGGACACCCTGTGGCCAGTCTACGCTGGGCATTAATTACACACAAGTaattgctttgcattttattctcgGGCAGCTTCTGAAAGGCTCAGTATTTCAAGCAATTTGGCAGTGTCACACAGCCTTTAGATCTGCAGAGATTAGGTCGGCTAAATAAGCCCAGCGTGCTATTTTCTCCTGTTCGATGTGTATTTCCTGAGGAAAATATTGTCTCAGTCAAAGAGCAGACATTACGATAACTGAATTACGCATTGGCATACAGTTGGTGCCGCGAGTGTTAGTATTACAGCCATAGACTGCTGTTGTTGCTGGTTTCCAGCTCTCCTGGTTTCCCTGCATCATTAGGCAACATTCACGTTTGTCTTCAGACTTGTTCACAATAGGGCCAGGCTGCACACAGGCCCACGACTGGGGCCTGAGGCAGCCTGGAGGCTACAGGgggaattgctttttttttaacctgttgaAGACCTGAGAGACATCCTAAAAGTCTTAAGAGACACCTGCAGCATTTATGCCGCGAGGGACCAAAGTTTGATAATCCCTCCTGCAAAGTATAATGTAATACAGTCcaagtgagagacagacactgaTGAGGCACTATTTTTGAGGGGCTGGTGCAATACTGTTCCAGCAGGGAGACTGGCCACATGTGGGAGTATTACAGGGTGGCGGTACAAACAGGGTCAGTGTATTACGGGAACATCCAGTAATCTGTGGTTATGGTAATGTCTGCTGTAGCATTGCTGAGGTGTTTGCAATGGCTGGGCTTCCTTCACTGTATTGA

Function

symbol description
dixdc1 Enables gamma-tubulin binding activity. Involved in canonical Wnt signaling pathway. Located in cytosol.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004546 True 5327 mRNA 0.49 14 53259179 53270254
TU11164 False 4440 TUCP 0.48 6 53264307 53270070

Neighbor

gene id symbol gene type direction distance location
AMCG00004549 NA coding upstream 14449 53233791 ~ 53244730 (+)
AMCG00004547 hspb2 coding upstream 48406 53206423 ~ 53210773 (+)
AMCG00004548 NA coding upstream 63917 53193663 ~ 53195262 (+)
AMCG00004545 NA coding upstream 66988 53187590 ~ 53192191 (+)
AMCG00004542 NA coding upstream 156558 53076079 ~ 53102621 (+)
AMCG00004554 dlat,LOC106563967 coding downstream 3446 53273700 ~ 53283989 (+)
AMCG00004555 NA coding downstream 22849 53293103 ~ 53295211 (+)
AMCG00004565 NA coding downstream 436840 53707094 ~ 53707967 (+)
AMCG00004564 NA coding downstream 446813 53717067 ~ 53719775 (+)
AMCG00004566 NA coding downstream 556693 53826947 ~ 53848054 (+)
G9000 NA non-coding upstream 113385 53145595 ~ 53145794 (+)
G8987 NA non-coding upstream 139483 53117197 ~ 53119696 (+)
G8982 NA non-coding upstream 152182 53106744 ~ 53106997 (+)
G8900 NA non-coding upstream 356397 52839448 ~ 52902782 (+)
G8836 NA non-coding upstream 636913 52619475 ~ 52622266 (+)
G9043 NA non-coding downstream 29409 53299663 ~ 53299872 (+)
G9160 NA non-coding downstream 594686 53864940 ~ 53866447 (+)
G9170 NA non-coding downstream 662915 53933169 ~ 53981983 (+)
G9191 NA non-coding downstream 742572 54012826 ~ 54013029 (+)
G9243 NA non-coding downstream 933967 54204221 ~ 54204990 (+)
G9012 NA other upstream 75196 53183394 ~ 53183983 (+)
AMCG00004509 NA other upstream 1245549 51989353 ~ 52013630 (+)
AMCG00004501 NA other upstream 1312361 51939549 ~ 51946818 (+)
G8606 NA other upstream 2143917 51114941 ~ 51115262 (+)
AMCG00004477 NA other upstream 2505747 50741388 ~ 50753432 (+)
G9118 NA other downstream 333507 53603761 ~ 53607898 (+)
AMCG00004563 NA other downstream 365785 53636039 ~ 53670522 (+)
G9128 NA other downstream 377757 53648011 ~ 53843859 (+)
G9129 NA other downstream 407310 53677564 ~ 53861528 (+)
G9132 NA other downstream 496289 53766543 ~ 53767110 (+)

Expression


Co-expression Network