AMCG00004542


Basic Information

Item Value
gene id AMCG00004542
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53076079 ~ 53102621 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004542
TACCTGGCCAACCACGGGCGGCTGAGTGAAGCGGAGGCCCGGCGCAAGTTCTGGCAGATCCTGTCTGCCGTGGAGTACTGCCACAACCGCAAGATCGTCCACCGCGACCTGAAGGCCGAGAACCTGCTGCTGGACGGGCACATGAACATCAAGATCGCAGATTTTGGTTTCGGGAATTTCTTCCAGCCGGGGGAGCCCCTCGCCACCTGGTGCGGGAGCCCTCCCTACGCGGCCCCTGAGGTCTTCGAGGGACAGCAGTATGAGGGGCCGCAGCTCGACATCTGGAGCATGGGCGTGGTGCTGTACGTGCTGGTGTGCGGCGCCCTGCCCTTCGACGGCCCCACGCTGCCCATCCTGCGACAGAGGCACTTGATTCGGCGCATGCTGGTGCTCGACCCCTCCAAGCGACTGTCCATCGCCCAGATCAAGGAGCACAAGTGGATGACCTTGGAGGTGCCGGTGCAGAGGCCGGTCCTGTACCAGCAGACGGCCAGCGAGGAGGGCGAGGCCGGCCTCTGTGAGCACAACGAGCAGGTCCTGAGACTCATGCACAGCCTGGGCATCGACCAGCACAAGACCGTCGAGTCCCTGCAGAACAAGAGCTACAACCACTTTGCTGCTATCTACTACCTGCTGGTGGAGAGACTGAAGTCTCACCGCAGCAGCTTCCCCGTGGACCAGAGGCTGGACGCCCGGCAACGCCGCCCCAGCACCATCGCCGAGCAGACCGTCGTCAAGGTAACTGGGGCGTCGTACAAtgcaccaccccaccccccccgccTGCGGCTTTCCCATTGTCCTGCACATGCCTCCGCCGAAGCCTTCACCTACCCACAATCCCCTTGCCCGCCTGAGCCAGGGCTCATGGAAGAGGACGTGGGCACACCCAAGGTGAACGGCTGCCTCCTGGACCCCCTACCCCCTGCCGCCATCCGCAAAGCGGGCCCCTCCTCCCCTAGCAACATGATGGAGACGTCCATCGATGAGGGCATCGAGACGGAGGAGCCTGACTCCGAGGATGACCCCTCGCAGGTCTTCACCGCCTTCCAGACCGCCCGCTTCGGCCAGCGCCGCCACACACTCTCCGAGGTCATCAACCAGCCTGGCATGGTGCCCGGGGCAGGGAAGCTGTTCAACGTCAGCCACAACCCCTCCCTGGGCAGTGTGGACTCAGAGTACGACATGGGCTCCATGCACAGCGATCTGGGCCTGCTGGAGGACACACCCAACCTCAACGAAGTGGTCCTGGCCAACACCTCCATTACCCGCATGACCCCGCCCTTCATCGGCGTGAGACCGGCGAACCCCGCCATGCAGGCACTCAGCTCGCAGAAGAGGGAGGCCAACAACCGCTCGCCGATCAGCTTCCGCGAGGGCCGCCGCGCCTCGGACACCTCCCTCACACAAGGTATCGTGGCATTTAGACAGCACCTGCAGAACCTGGCCAGAACCAAAGGCATTCTGGAGCTCAACAAGGTGCAGATGCTGTATGAGCAGATGGGCTCCAGTGAGGACCCCTCCCTCggacccccacacccccatctGCCCGACTTCCTGGACCCCCAACAGCAGGGGGACATGGCCCAGCAGCAGGAAAGTGTAGCAGTGTTTTCCAACGGAGCGCACCCCCCGCTCCTATCCCGGAGGCAGAGTCTGGAGACGCAGTACCTGGCGCACCGGCTACAGAAGGCCAGCCTCCTGGCGAACAACCCTCTGGCCAACAGCCCCAACAGCTGCCAGATGTTTTGCAAGGAAACCCCACGGAGTCTGGAGCAGCAGCTACAGGAGCACAGGCTGCACCAGAAGCGGCTCTACCTCCAGAAGCAGTCCCAGCTGCAGGCCTACTTCAACCAGATGCACATCGTTGAGGGCTCCTACCCCCCACGCCAGCCACTGGGACACCAGGATTCTGTGGGGGCCCCCCCAGCACAAGGGgtcccccagcagcagcagcaacagcagccaccacagcaacaacaacagtcCCAGCCGGCCGCCCCCCAGCCCTCAACCCCCTACACCCGGGCACAGCCGCTCAGCCCCCTCCTGGAGCCCACCGGAGCAGAGCCTCTGACCTACGACCCCTACCTGGGACAATACCAGGACCTGCGCCCCACGGGCCTTCCCCCCAGCCTGAGTGCCCAGGGCCAGCCCCCTGAGCCCCTGAACTACAGCTATGCCCCCTGCGAGCTTGTGCTTTCTGGCTCCCCAGAGCCCCTGTATCAGGAGCAGTTCCCGTACCCCATGGACCCCAGGCAGCCTGCCAGCATGGGGCGGACAGAGGGGGCTCCGGACGGCTACGAGGGCCTGGCCATCCCCGAGCTGCACAACACCTTCCTGGACTGCGAGATGATGGAGACTGTGGACTCCCAGCACGGCTTTGTGCTGGTGAAC

Function

GO: NA

KEGG:

id description
K16311 SIK2; serine/threonine-protein kinase SIK2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004542 True 2394 mRNA 0.64 12 53076079 53102621

Neighbor

gene id symbol gene type direction distance location
AMCG00004543 NA coding upstream 17325 53045999 ~ 53058754 (+)
AMCG00004536 NA coding upstream 32858 53034664 ~ 53043221 (+)
AMCG00004537 NA coding upstream 42823 53018982 ~ 53033256 (+)
AMCG00004541 NA coding upstream 61734 53011189 ~ 53014345 (+)
AMCG00004538 NA coding upstream 90729 52965214 ~ 52985350 (+)
AMCG00004545 NA coding downstream 84969 53187590 ~ 53192191 (+)
AMCG00004548 NA coding downstream 91042 53193663 ~ 53195262 (+)
AMCG00004547 hspb2 coding downstream 103802 53206423 ~ 53210773 (+)
AMCG00004549 NA coding downstream 131170 53233791 ~ 53244730 (+)
AMCG00004554 dlat,LOC106563967 coding downstream 171079 53273700 ~ 53283989 (+)
G8900 NA non-coding upstream 173297 52839448 ~ 52902782 (+)
G8836 NA non-coding upstream 453813 52619475 ~ 52622266 (+)
G8835 NA non-coding upstream 459227 52616536 ~ 52616852 (+)
G8817 NA non-coding upstream 521700 52553921 ~ 52554379 (+)
G8816 NA non-coding upstream 543061 52532729 ~ 52533018 (+)
G8982 NA non-coding downstream 4123 53106744 ~ 53106997 (+)
G8987 NA non-coding downstream 14576 53117197 ~ 53119696 (+)
G9000 NA non-coding downstream 42974 53145595 ~ 53145794 (+)
G9043 NA non-coding downstream 197042 53299663 ~ 53299872 (+)
G9160 NA non-coding downstream 762319 53864940 ~ 53866447 (+)
AMCG00004509 NA other upstream 1062449 51989353 ~ 52013630 (+)
AMCG00004501 NA other upstream 1129261 51939549 ~ 51946818 (+)
G8606 NA other upstream 1960817 51114941 ~ 51115262 (+)
AMCG00004477 NA other upstream 2322647 50741388 ~ 50753432 (+)
AMCG00004463 NA other upstream 2833036 50236677 ~ 50243043 (+)
G9012 NA other downstream 80773 53183394 ~ 53183983 (+)
AMCG00004546 dixdc1,LOC107715327,LOC107693513 other downstream 156558 53259179 ~ 53270254 (+)
G9118 NA other downstream 501140 53603761 ~ 53607898 (+)
AMCG00004563 NA other downstream 533418 53636039 ~ 53670522 (+)
G9128 NA other downstream 545390 53648011 ~ 53843859 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_02315334_02349602 SIK2A coding CI01000059 null 2315322 ~ 2349853 (-)