AMCG00004538


Basic Information

Item Value
gene id AMCG00004538
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52965214 ~ 52985350 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004538
ATGCGACAACTCTTCCCCCAGAGGCCGAGCGGACGTCAGGAGCCGGGCCAGCACCTCCCGCAGCTCCCCAGCCCGGCCCTGGAGGCCAGCTCTGAACCCTTCTGCATTCTGGACCAGCCTGTCAGAGACAGCCTGCAAATGCTGCTGCAGCTCTTCCTCAGTGGACGAAGGAGGCACCCCCTCTCGGAGCTCCCCGACCGCCCTGGCTGTCTGCACCCTGAACTCTTCCAGCACTTCCTGGTAGGGGGCGTCTCCTTGGGGTGCATCGGCCTTGACCTCCAGTCCCCGGATGTAGGTGTTGAGGTGACTGCAGAGCTCCTGGGTGTTGCGGTTGAACACGCCCTGCATTCGTTGGGCGTAGGGGGCCAGGCGGTCCCGGATCTGGGCCCCCTCGTGCTGCAGCTGGTGGCTATATGGATTTTGGCTCATATTCTGGGAACGGGAGCTGTGACAATGGGACACAGtgtggagaagagagagaagagcagcCTCCATGCCAGCCAGGTATTGTGGGATTCTAGAGTAACCTTCCTTGGATTTTACTGCCCAGATGGAGGTTCAGCCCCGGTCCCCTGTCCGAAGGGCACATTTGGGTGGAGTGTGGGGGCCAAGGATGCGGGGAGCTGTGAGAAGTGCCCAGCCCACCACTTTAGTCCTAGGCCTGGCATGCCTGCTTGCCTGCCCTGTGGCACCTGGGCAGAGCAGCCAAACCCTGGCCAGGACACCTGTGTGTGCCCAGGAGAGGGCCAGGCTTTCCAGGCCAGTGACGGGCAGTGTCCGTGCTCGCTGGGGTACAAGCCGGTGGGCGAGGGCTCTGGGCTGTGTGTGAGGAGGGTGTATGAGATCTGCAGAGATGGCACAGCGCGCTCACAGGAGGGTGTCTGTCTGGACAGAGAACAGAGGAGACAGAGGCAGGCCATCCAGTTGACCTGCACAGGGACACTGAAGCTCCACATCTCCAGCAGCAAGACCAAGGTCAAGATGTCTGCAAACGCACTGGACAAAGTCCTGAGCAGCTGGGACTTCCTAAATACCCTGCACTGCACCAGGCATTTCAACTACACCCGCCCAGTCTATCTGGTGGAGACTAACAtgtttgCTGTGCTGATGATTTTTGCAGAAGCCGGGTTTATAGGGGTGCTGAATGCAGAACCGAGAGAGGTACAGAGGTTGTTCGGGAAGACCAGACAAGAGCCCAGCAGTCTGAAGGAGTCATCAGATGTGTTTGGAAATGTAACCTTCTACAATGAGACCACAGATGATGATGGATCTCACTGGCCAAGGAATGCGGGAGTGGCAGAACCAGCCTCCATGTTCACTGGGATCCTGAACCCCACAGTGTGTCTCAGTCTGGGGGACATTCTGCTATTCACTGTGCTGAAGGAACACTACCCACAAGACAACTTGTACAATACAAACGCCAACTTCGACTGGGGGGCCTTCCGGTCCCTGGCAGAGGACATGACTCTGGCTCCGACCCCCGCCAGGCTCTTCTCCCTGTCGTTCCCTGAGGCCGGAGTTTATGTGCTCAAGCTGAACAGCAACCGCTACAAAAGGATGTACATCAAGGTGATGCCCGTTGGAGGGCAGTGCTACGAGGTCGGGCCCTTCTTCCCCACAGTTCCCCGACACATCATCCGCATGGGCATGGCCAGGAGCCGTCACCTTCTGCTGCAGCCTGATTGGCCAGTCATCGTTGGGCTGCTGGTGGGCTCAGCGCTCATTCTCAGCGTTTGTATCACTCTACTGATTCTCTTCCGGGAGCATGGCTGGTCGGAGAAGACACCCATCAGCCCCAGATACAGGAAGCTGCAGCTCAAGTACAACCTGGATGACTATTCCTCCAGGGGCTCCACTGTGGTGGCTGTGAAGAAGTACCATCGCAGCTTGCAGATGCATGAGCCAGACCCAGGAGGCCAGACACAGacagCCAGTGACCTCACAGACCCCCCTGTCCCTGCAGTGGCCGCTCTGACAGCCGATGATTTCTGGGACTACGAGCAGCAGATTGACCTGGAAGCTTTCGACACCCATGTGTTCTACGACATCTTGCTGAAACACACCATCGCTGTCACCACAAGGCTGGGCCAGCTCAAGGAGGAGGCGAAGGAGCTGTACGGCAAGGTGGCGGGCCGAGCCGAGTGGCTTGGTGCGCTGTGGGTGTCTAGACTGACTGAGACGGGTGGCAGGGTAGGAGCCAGAGATGGCGTGAAGGAGCTGTACCAGAGGAAGCAcagggaggtggaggaggagagggtgCGCCGCCGGGGCTTGGCTGCAGAGCTGGGATGCCTGCTGGACAGACAGCTCCAGACGCTGCAGGAGGAGCTGGTGGTCCGACAGGAGAGGCAGGGGGCATTTGGAGGTCAGCTGAGAGAGGCCCTGCGGCTGTTGGACCAGCTCTCCGCGGCAGTAGCCAGTCAGCACGGCACGCACTgggagcagcagcaacaacaactGGCTGCCCAGAGGCTGGATTCTCTCATAGCCCTGATGTCAGAGGATGTGACCCGGGAGTGCCAGAGGCTGGGGGCCTGGGCTGTGCTGGGCGAGGGCACTGGGGGCCACTTGCTTTCCCCTGGGAGAGGGCAGGTCCTCACCAGGGAAGAACTGATCGCTCCTGATGGGACTGTGCGAGCATTTGATGCCATCCACATTGATGCCTGCACTGGTTTGATCATCCCCAATCGTGGGACTCAGATGCTGCTTGCCAGTGGACTCACCATACCAGTGCCCTCAGATTTCTTTGTGCACCCCCAGACAGGCCGGGTGCTTCCAGTGGCGGGCAACGTGGGCTACGACCCAGGGAGGTCCAGACTCAAGATGGCATTCGGAGGGCCCATGTGTGACCCTATCACTGGGGTTCTTGTGCCGATCTTGGCTGTCACCATTCACCCAGAGACTGGGCTGGTGTACCCTCTGGGGGGGACTCACACTTGTCCCTTTACCCACCTGCCCTGTGCCATTCAGATTGGAAGGGCCATGCTGGAGCTCAGGACTGGCAGGGTGATGCTCACTGTGGGAGTCAGCCTGGATCCCAAAACTGGGGATGTGATTCCAGTAGGGGGACTGATAAGCCCATCTAGTGTCCCACTGCTCCTGGGCAGCTCCTTCACTGAGCCCCTGAGTGGTCGTCCAGTTCGGGTCGGGGGTGCCACCTTAAAGACCGGGAAGCTGGTGCCCCATGCCGGGGGCTACCAGGCCCTGTTGGATGCCCAGACGCTGGCCTGCAGGCTACGAGTCACAGAGTTGCTGAGGGAGTGCAGGGAGGGCCTGAGCACTGGGCTGCCACCGCCCGGGGACTGTGTGCCTGGAGAGAGGGACCCCCTCAGTATTGTGGCAGAAGAAATGCAGCACGCTTGTAAGCGGAGCCAGCATAGCCTGCTGCAGCTCATCTGCGGCCTGGAGAGACAAAGAGAGCAGGCCAGGACCCTTGTCACAGACGGAGGATGTCAAGGTGTGATGAAATTCCCAGGCACTGCACTCTCCCTGCCTGCTCTGCCTGGAGTGGAGTATCCTGACCCAGAAGGCTCAGGGTTGCTGATCCCTGTTCTGGGGGCGCAGTTCAACTGGGACAGTGGGTGTCTCGTCCCTGTAGCCGGAACCATGGAAGACGCAGATGGCAAAGGGTTGGTTCCGATCCGGATTGGGGCACGCACAGTGGACCCAGTTACCAGGACAGTGGGTGCAGTGGTCGGAGCTCGCCTTGACCCATTGAGAAAGACTGTGGTCCCCATCACTCAGTCCTACAAACAGTTCCTGAGAGGAATCCCAGACCAGGAGCTGGTAGATGTGCTGCAGGAGGAAGCCACTCTGAGGAGCAATTACTGGAGATGCCAACGACAGAAAGAGGAGGAGCTCCTGAGAGATCTGCACGGTGCCCTGCAGCACTGCCTCCACACAGCAGCCCTAGGGCAGGTGGAGAAGGCCCACTGGATAGACAGTGTGAGAAATATTCAGGTCACAGCCACAGAGCTCCAAGAAGCGGCACAGACTGAAGCCCACAGACAAGAGACAGAGACATCGGAGCTGTCCCAAGTGCTGCCGCCAGATGTGTTTTCGATCTTAAACAAAGGTGacgaggaggagctggagcagcagcgACGGGTGCAGGCCGTGCTGGGGGCCATGTTGCACAAGGTGAGCGCCACTGTGGACAGACTGCAGCAGGAGCAGGACAGACTGATGGGGCAAGCGTCCGCACTGCAGCACAGCAAGGCCTGGGGGCTGGGGGTGAGGGAGCTTTGGGAGCAGCTGCTGGCGAGGCAAAGGGGTctggaggaggcaAATAGAACCTACAGAAACCCCCAGCGAGCCATTGAAATGAATCAGCGCCAAGCTGTCCCCTTACTGCAGCGCCTCATCCGCCTGATGGAGGAGAATAAACAGCTGCGCCTGTCCCCCACTGCCTCCTCCTGGCCTGGCTCAGGCCAACTCTCATCACCAGGGACCCCCGCTGTCTCTCTGAAGGACACAGAGAAAGCCCTCTTCCAAAAGTCTTCCTCTCGAGATGCAAGAGTGTCCCTGAAACCGGCCGATCAACTGCACAAGGTGGAGTGGGATGCATTGCTGGATCGCTCCCCCCTGTTCCAGCTGCTTCAGAAGGTGGACCAACAGCTGAGAGCCAGGGCAAGAGCTGCTGGGCTGCTGGAGCAAGAGCATGACACTGCGACCGAGCCACAGGCCAAGGGCCAGCGTGAGGGACGGCCCTTCCTGGATCTGCTGGATGCACAGTGGAGGTGTGAGGGAGAGCTGACGGCCCTCAGCCCAGACAGACTTGGCCCCCGCGAGTTCGTCATCTACCAGCATGGCCTGTACCTGCTCCGCTTCCTCCACACTCACACGCAGGTTCCAGAAGTCACTTTACTGGTGGCGACCACCTTGCCCTCTAACAACTACAGCCACAACCCCTTCCGACACTCCTTCTTCTACCAGGAAGCTCAGAGGACCCTGTTTGTCCGGCGGCAGCGTTTGCAGTCCGTGGGCAGCTTCTCCCTGCTGCTCCTGCACTGCCTGTCTCACATCGCCACGGGCGAGCTCCGGCACGACTCCAGCCCTGTCTTCCAGAGATTCTTCTTCCAGGCATGCCTCAACGAGTTGTTCCTCTTGCGGCTGGATGGCTATGGGGACGCCCCCTCGGTGAGAGCTCTGCGGGGCGCCCTGGCAGGGGAGGCATCTAGCGGCCCTGCCACCCTCTCTGCCCTCTCTACCCTCCTACAGGACAGGGTGCAGGAGCCAACCCTGGCATGCCTCTCTGAGAAGCGTGCATGTGAACAGCTACAGAAGTACCGGGAGGCGTCCATCTACCGCAGTGTGGAGGGCCTGCTGAGGGAGAGGAGCGTGGGGGTGAGGAAGGACTATCACAGACAGGCACCACTGAGCGCAGGAAGCCGGAGCAGCTCTCACACAGGGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004538 True 5415 mRNA 0.60 32 52965214 52985350

Neighbor

gene id symbol gene type direction distance location
AMCG00004535 NA coding upstream 48913 52915648 ~ 52916301 (+)
AMCG00004531 timm8b,LOC107598437,LOC107717885 coding upstream 52630 52912010 ~ 52912584 (+)
AMCG00004530 NA coding upstream 69811 52883208 ~ 52895403 (+)
AMCG00004527 NA coding upstream 120396 52831176 ~ 52844818 (+)
AMCG00004516 NA coding upstream 714847 52249138 ~ 52250367 (+)
AMCG00004541 NA coding downstream 25839 53011189 ~ 53014345 (+)
AMCG00004537 NA coding downstream 33632 53018982 ~ 53033256 (+)
AMCG00004536 NA coding downstream 49314 53034664 ~ 53043221 (+)
AMCG00004543 NA coding downstream 60649 53045999 ~ 53058754 (+)
AMCG00004542 NA coding downstream 90729 53076079 ~ 53102621 (+)
G8900 NA non-coding upstream 62432 52839448 ~ 52902782 (+)
G8836 NA non-coding upstream 342948 52619475 ~ 52622266 (+)
G8835 NA non-coding upstream 348362 52616536 ~ 52616852 (+)
G8817 NA non-coding upstream 410835 52553921 ~ 52554379 (+)
G8816 NA non-coding upstream 432196 52532729 ~ 52533018 (+)
G8982 NA non-coding downstream 121394 53106744 ~ 53106997 (+)
G8987 NA non-coding downstream 131847 53117197 ~ 53119696 (+)
G9000 NA non-coding downstream 160245 53145595 ~ 53145794 (+)
G9043 NA non-coding downstream 314313 53299663 ~ 53299872 (+)
G9160 NA non-coding downstream 879590 53864940 ~ 53866447 (+)
AMCG00004509 NA other upstream 951584 51989353 ~ 52013630 (+)
AMCG00004501 NA other upstream 1018396 51939549 ~ 51946818 (+)
G8606 NA other upstream 1849952 51114941 ~ 51115262 (+)
AMCG00004477 NA other upstream 2211782 50741388 ~ 50753432 (+)
AMCG00004463 NA other upstream 2722171 50236677 ~ 50243043 (+)
G9012 NA other downstream 198044 53183394 ~ 53183983 (+)
AMCG00004546 dixdc1,LOC107715327,LOC107693513 other downstream 273829 53259179 ~ 53270254 (+)
G9118 NA other downstream 618411 53603761 ~ 53607898 (+)
AMCG00004563 NA other downstream 650689 53636039 ~ 53670522 (+)
G9128 NA other downstream 662661 53648011 ~ 53843859 (+)

Expression


Co-expression Network