RNA id: AMCG00004538


Basic Information

Item Value
RNA id AMCG00004538
length 5415
RNA type mRNA
GC content 0.60
exon number 32
gene id AMCG00004538
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52965214 ~ 52985350 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGACAACTCTTCCCCCAGAGGCCGAGCGGACGTCAGGAGCCGGGCCAGCACCTCCCGCAGCTCCCCAGCCCGGCCCTGGAGGCCAGCTCTGAACCCTTCTGCATTCTGGACCAGCCTGTCAGAGACAGCCTGCAAATGCTGCTGCAGCTCTTCCTCAGTGGACGAAGGAGGCACCCCCTCTCGGAGCTCCCCGACCGCCCTGGCTGTCTGCACCCTGAACTCTTCCAGCACTTCCTGGTAGGGGGCGTCTCCTTGGGGTGCATCGGCCTTGACCTCCAGTCCCCGGATGTAGGTGTTGAGGTGACTGCAGAGCTCCTGGGTGTTGCGGTTGAACACGCCCTGCATTCGTTGGGCGTAGGGGGCCAGGCGGTCCCGGATCTGGGCCCCCTCGTGCTGCAGCTGGTGGCTATATGGATTTTGGCTCATATTCTGGGAACGGGAGCTGTGACAATGGGACACAGtgtggagaagagagagaagagcagcCTCCATGCCAGCCAGGTATTGTGGGATTCTAGAGTAACCTTCCTTGGATTTTACTGCCCAGATGGAGGTTCAGCCCCGGTCCCCTGTCCGAAGGGCACATTTGGGTGGAGTGTGGGGGCCAAGGATGCGGGGAGCTGTGAGAAGTGCCCAGCCCACCACTTTAGTCCTAGGCCTGGCATGCCTGCTTGCCTGCCCTGTGGCACCTGGGCAGAGCAGCCAAACCCTGGCCAGGACACCTGTGTGTGCCCAGGAGAGGGCCAGGCTTTCCAGGCCAGTGACGGGCAGTGTCCGTGCTCGCTGGGGTACAAGCCGGTGGGCGAGGGCTCTGGGCTGTGTGTGAGGAGGGTGTATGAGATCTGCAGAGATGGCACAGCGCGCTCACAGGAGGGTGTCTGTCTGGACAGAGAACAGAGGAGACAGAGGCAGGCCATCCAGTTGACCTGCACAGGGACACTGAAGCTCCACATCTCCAGCAGCAAGACCAAGGTCAAGATGTCTGCAAACGCACTGGACAAAGTCCTGAGCAGCTGGGACTTCCTAAATACCCTGCACTGCACCAGGCATTTCAACTACACCCGCCCAGTCTATCTGGTGGAGACTAACAtgtttgCTGTGCTGATGATTTTTGCAGAAGCCGGGTTTATAGGGGTGCTGAATGCAGAACCGAGAGAGGTACAGAGGTTGTTCGGGAAGACCAGACAAGAGCCCAGCAGTCTGAAGGAGTCATCAGATGTGTTTGGAAATGTAACCTTCTACAATGAGACCACAGATGATGATGGATCTCACTGGCCAAGGAATGCGGGAGTGGCAGAACCAGCCTCCATGTTCACTGGGATCCTGAACCCCACAGTGTGTCTCAGTCTGGGGGACATTCTGCTATTCACTGTGCTGAAGGAACACTACCCACAAGACAACTTGTACAATACAAACGCCAACTTCGACTGGGGGGCCTTCCGGTCCCTGGCAGAGGACATGACTCTGGCTCCGACCCCCGCCAGGCTCTTCTCCCTGTCGTTCCCTGAGGCCGGAGTTTATGTGCTCAAGCTGAACAGCAACCGCTACAAAAGGATGTACATCAAGGTGATGCCCGTTGGAGGGCAGTGCTACGAGGTCGGGCCCTTCTTCCCCACAGTTCCCCGACACATCATCCGCATGGGCATGGCCAGGAGCCGTCACCTTCTGCTGCAGCCTGATTGGCCAGTCATCGTTGGGCTGCTGGTGGGCTCAGCGCTCATTCTCAGCGTTTGTATCACTCTACTGATTCTCTTCCGGGAGCATGGCTGGTCGGAGAAGACACCCATCAGCCCCAGATACAGGAAGCTGCAGCTCAAGTACAACCTGGATGACTATTCCTCCAGGGGCTCCACTGTGGTGGCTGTGAAGAAGTACCATCGCAGCTTGCAGATGCATGAGCCAGACCCAGGAGGCCAGACACAGacagCCAGTGACCTCACAGACCCCCCTGTCCCTGCAGTGGCCGCTCTGACAGCCGATGATTTCTGGGACTACGAGCAGCAGATTGACCTGGAAGCTTTCGACACCCATGTGTTCTACGACATCTTGCTGAAACACACCATCGCTGTCACCACAAGGCTGGGCCAGCTCAAGGAGGAGGCGAAGGAGCTGTACGGCAAGGTGGCGGGCCGAGCCGAGTGGCTTGGTGCGCTGTGGGTGTCTAGACTGACTGAGACGGGTGGCAGGGTAGGAGCCAGAGATGGCGTGAAGGAGCTGTACCAGAGGAAGCAcagggaggtggaggaggagagggtgCGCCGCCGGGGCTTGGCTGCAGAGCTGGGATGCCTGCTGGACAGACAGCTCCAGACGCTGCAGGAGGAGCTGGTGGTCCGACAGGAGAGGCAGGGGGCATTTGGAGGTCAGCTGAGAGAGGCCCTGCGGCTGTTGGACCAGCTCTCCGCGGCAGTAGCCAGTCAGCACGGCACGCACTgggagcagcagcaacaacaactGGCTGCCCAGAGGCTGGATTCTCTCATAGCCCTGATGTCAGAGGATGTGACCCGGGAGTGCCAGAGGCTGGGGGCCTGGGCTGTGCTGGGCGAGGGCACTGGGGGCCACTTGCTTTCCCCTGGGAGAGGGCAGGTCCTCACCAGGGAAGAACTGATCGCTCCTGATGGGACTGTGCGAGCATTTGATGCCATCCACATTGATGCCTGCACTGGTTTGATCATCCCCAATCGTGGGACTCAGATGCTGCTTGCCAGTGGACTCACCATACCAGTGCCCTCAGATTTCTTTGTGCACCCCCAGACAGGCCGGGTGCTTCCAGTGGCGGGCAACGTGGGCTACGACCCAGGGAGGTCCAGACTCAAGATGGCATTCGGAGGGCCCATGTGTGACCCTATCACTGGGGTTCTTGTGCCGATCTTGGCTGTCACCATTCACCCAGAGACTGGGCTGGTGTACCCTCTGGGGGGGACTCACACTTGTCCCTTTACCCACCTGCCCTGTGCCATTCAGATTGGAAGGGCCATGCTGGAGCTCAGGACTGGCAGGGTGATGCTCACTGTGGGAGTCAGCCTGGATCCCAAAACTGGGGATGTGATTCCAGTAGGGGGACTGATAAGCCCATCTAGTGTCCCACTGCTCCTGGGCAGCTCCTTCACTGAGCCCCTGAGTGGTCGTCCAGTTCGGGTCGGGGGTGCCACCTTAAAGACCGGGAAGCTGGTGCCCCATGCCGGGGGCTACCAGGCCCTGTTGGATGCCCAGACGCTGGCCTGCAGGCTACGAGTCACAGAGTTGCTGAGGGAGTGCAGGGAGGGCCTGAGCACTGGGCTGCCACCGCCCGGGGACTGTGTGCCTGGAGAGAGGGACCCCCTCAGTATTGTGGCAGAAGAAATGCAGCACGCTTGTAAGCGGAGCCAGCATAGCCTGCTGCAGCTCATCTGCGGCCTGGAGAGACAAAGAGAGCAGGCCAGGACCCTTGTCACAGACGGAGGATGTCAAGGTGTGATGAAATTCCCAGGCACTGCACTCTCCCTGCCTGCTCTGCCTGGAGTGGAGTATCCTGACCCAGAAGGCTCAGGGTTGCTGATCCCTGTTCTGGGGGCGCAGTTCAACTGGGACAGTGGGTGTCTCGTCCCTGTAGCCGGAACCATGGAAGACGCAGATGGCAAAGGGTTGGTTCCGATCCGGATTGGGGCACGCACAGTGGACCCAGTTACCAGGACAGTGGGTGCAGTGGTCGGAGCTCGCCTTGACCCATTGAGAAAGACTGTGGTCCCCATCACTCAGTCCTACAAACAGTTCCTGAGAGGAATCCCAGACCAGGAGCTGGTAGATGTGCTGCAGGAGGAAGCCACTCTGAGGAGCAATTACTGGAGATGCCAACGACAGAAAGAGGAGGAGCTCCTGAGAGATCTGCACGGTGCCCTGCAGCACTGCCTCCACACAGCAGCCCTAGGGCAGGTGGAGAAGGCCCACTGGATAGACAGTGTGAGAAATATTCAGGTCACAGCCACAGAGCTCCAAGAAGCGGCACAGACTGAAGCCCACAGACAAGAGACAGAGACATCGGAGCTGTCCCAAGTGCTGCCGCCAGATGTGTTTTCGATCTTAAACAAAGGTGacgaggaggagctggagcagcagcgACGGGTGCAGGCCGTGCTGGGGGCCATGTTGCACAAGGTGAGCGCCACTGTGGACAGACTGCAGCAGGAGCAGGACAGACTGATGGGGCAAGCGTCCGCACTGCAGCACAGCAAGGCCTGGGGGCTGGGGGTGAGGGAGCTTTGGGAGCAGCTGCTGGCGAGGCAAAGGGGTctggaggaggcaAATAGAACCTACAGAAACCCCCAGCGAGCCATTGAAATGAATCAGCGCCAAGCTGTCCCCTTACTGCAGCGCCTCATCCGCCTGATGGAGGAGAATAAACAGCTGCGCCTGTCCCCCACTGCCTCCTCCTGGCCTGGCTCAGGCCAACTCTCATCACCAGGGACCCCCGCTGTCTCTCTGAAGGACACAGAGAAAGCCCTCTTCCAAAAGTCTTCCTCTCGAGATGCAAGAGTGTCCCTGAAACCGGCCGATCAACTGCACAAGGTGGAGTGGGATGCATTGCTGGATCGCTCCCCCCTGTTCCAGCTGCTTCAGAAGGTGGACCAACAGCTGAGAGCCAGGGCAAGAGCTGCTGGGCTGCTGGAGCAAGAGCATGACACTGCGACCGAGCCACAGGCCAAGGGCCAGCGTGAGGGACGGCCCTTCCTGGATCTGCTGGATGCACAGTGGAGGTGTGAGGGAGAGCTGACGGCCCTCAGCCCAGACAGACTTGGCCCCCGCGAGTTCGTCATCTACCAGCATGGCCTGTACCTGCTCCGCTTCCTCCACACTCACACGCAGGTTCCAGAAGTCACTTTACTGGTGGCGACCACCTTGCCCTCTAACAACTACAGCCACAACCCCTTCCGACACTCCTTCTTCTACCAGGAAGCTCAGAGGACCCTGTTTGTCCGGCGGCAGCGTTTGCAGTCCGTGGGCAGCTTCTCCCTGCTGCTCCTGCACTGCCTGTCTCACATCGCCACGGGCGAGCTCCGGCACGACTCCAGCCCTGTCTTCCAGAGATTCTTCTTCCAGGCATGCCTCAACGAGTTGTTCCTCTTGCGGCTGGATGGCTATGGGGACGCCCCCTCGGTGAGAGCTCTGCGGGGCGCCCTGGCAGGGGAGGCATCTAGCGGCCCTGCCACCCTCTCTGCCCTCTCTACCCTCCTACAGGACAGGGTGCAGGAGCCAACCCTGGCATGCCTCTCTGAGAAGCGTGCATGTGAACAGCTACAGAAGTACCGGGAGGCGTCCATCTACCGCAGTGTGGAGGGCCTGCTGAGGGAGAGGAGCGTGGGGGTGAGGAAGGACTATCACAGACAGGCACCACTGAGCGCAGGAAGCCGGAGCAGCTCTCACACAGGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11001 lncRNA upstream 62432 52839448 ~ 52902782 (+) True G8900
TU10923 lncRNA upstream 342948 52619475 ~ 52622266 (+) True G8836
TU10922 lncRNA upstream 348362 52616536 ~ 52616852 (+) True G8835
TU10900 lncRNA upstream 410835 52553921 ~ 52554379 (+) True G8817
TU10899 lncRNA upstream 432196 52532729 ~ 52533018 (+) True G8816
TU11108 lncRNA downstream 121394 53106744 ~ 53106997 (+) True G8982
TU11113 lncRNA downstream 131847 53117197 ~ 53119696 (+) True G8987
TU11127 lncRNA downstream 160245 53145595 ~ 53145794 (+) True G9000
TU11185 lncRNA downstream 314313 53299663 ~ 53299872 (+) True G9043
TU11289 lncRNA downstream 692214 53677564 ~ 53762566 (+) False G9129
AMCG00004535 mRNA upstream 48913 52915648 ~ 52916301 (+) True AMCG00004535
AMCG00004531 mRNA upstream 52630 52912010 ~ 52912584 (+) True AMCG00004531
AMCG00004530 mRNA upstream 69811 52883208 ~ 52895403 (+) True AMCG00004530
AMCG00004527 mRNA upstream 120396 52831176 ~ 52844818 (+) True AMCG00004527
AMCG00004516 mRNA upstream 714847 52249138 ~ 52250367 (+) True AMCG00004516
AMCG00004541 mRNA downstream 25839 53011189 ~ 53014345 (+) True AMCG00004541
AMCG00004537 mRNA downstream 33632 53018982 ~ 53033256 (+) True AMCG00004537
AMCG00004536 mRNA downstream 49314 53034664 ~ 53043221 (+) True AMCG00004536
AMCG00004543 mRNA downstream 60649 53045999 ~ 53058754 (+) True AMCG00004543
AMCG00004542 mRNA downstream 90729 53076079 ~ 53102621 (+) True AMCG00004542
TU10796 other upstream 951584 51989353 ~ 52013630 (+) True AMCG00004509
TU10780 other upstream 1018396 51939561 ~ 51946818 (+) True AMCG00004501
TU10626 other upstream 1849952 51114941 ~ 51115262 (+) True G8606
TU10527 other upstream 2211865 50743791 ~ 50753349 (+) False AMCG00004477
TU10340 other upstream 2807495 50151264 ~ 50157719 (+) True G8377
TU11143 other downstream 198044 53183394 ~ 53183983 (+) True G9012
TU11164 other downstream 278957 53264307 ~ 53270070 (+) False AMCG00004546
TU11263 other downstream 618411 53603761 ~ 53607898 (+) True G9118
TU11273 other downstream 650689 53636039 ~ 53643598 (+) False AMCG00004563
TU11276 other downstream 662661 53648011 ~ 53843859 (+) True G9128

Expression Profile