AMCG00004547 (hspb2)


Basic Information

Item Value
gene id AMCG00004547
gene name hspb2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53206423 ~ 53210773 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004547
ATGCCTGTCTTGCGACGACTGGAAGCCATCCTGGGCAAGGGCACGTGGCATGCCCATGAAGCAGAGACAGCAGCCAGCGTCTGCCTGAACGGACCTGTCCTGTCCCAGGGGCCCAATGCCAACTCTCTTCGTCTGTGCAAGCCCAGGCCTGGGATGACCCAGCGCACTGTGGCGTTTCTGGCTCTAGCTATAGCTGCACTCGTGAGGATGGCCGAGCGCACAGTGCCGCACGCATACCCCATGAGTGTGGAGTACGAGATGTCATCGCCCCGCCGCATCTACGACCAGAACTTCGGAGAAGGCCTGTCTCCTCAGGACATGCTGGCCCCCACACTGTACCACGGCTACTACATCCGGCCGCGGATCAACAAGCAGCTGGAGCGCGGCTTCTCGGAGGTGGACAGCTGCGACGACTGGTTCCGCGTGCTGCTGGACGTGTGCCAGTTCACGCCGGACGAGCTGTCGGTGCGCACCGTCGACAACCTGCTGGAGGTCAGCGGCCACCACGCCCAGCGGCTGGACCAGCACGGCTTCATCAGTCGCGACTTCACCCGCACCTACATCCTGCCCATGGGCGTGGATCCACTGCTGATGCAAGTCTCCCTCTCCCACGATGCCGTGCTCTGCGTGGAGGCCCCCCGGAAAAGCGCCGACGTCAAGCCCAGCGTCAACGAGCTGAAGATCCGGGTGGAAGAGAAGGAGAAGCTGGGAGAGGCGGCGAAGAAGAGCTCGTGAACGGGGTCTCCTCCAAGACATTCCCACCCCCCCAAGTCAGGCCCTGTACAGTATGTTTCCTTCTGTCTGAATCGACGCACACAGCTGAATAGCCATTGAATGATTCTGGTTTGTCacttgtttggttttgtttcataaGCCCTTGACTGGGGCTTTTAAAAGTCCTAACAAAGAGCTCACCCTTGTGTTGCTTTTCTCATTTGTGTCAGGAAACTTGTACACAAGTTACTGCTTTCGCCCCGTAACAATTGCACACAGATCAGTTTTTGTGGCTTGAAATTGAGCAATGGTAGATTTTATCTTGGTCGTGACAGTGGGTGAGTGGGCCAGTAACTGTAACATGAATGAAAAGTCAACGAAATATAAATGCGGCATTTCATATCACAAAATCATCATCCCCTGCGGTCGCTGTGGGTACAACTGTGGATACCACTGTCATCAGGCATAAACAACGTATCTAAAGAGGCTACATACATGACAGAGACCCCTGTTTGAATTCAAACCACAATCAGACCCTTGTAAAAATGACAGTTCAGTGTTATTGTCCTTTAAGTCCTACTCATCCAGGGAGAAGTAACAATTCAAAAGTAGTGGCAGCAACATTCAATCAATGACTTGTTTGCTcatttgtgtcatttttttattttattaggcaCATTCTCAACAGGCTTTACAAGGTCATATTGTCAACAAAACTAATTACCATTAATTCATTGTAggtaattaattcaattatatcCTGATGAAGAGCTCGTGTAGATCAAAACGTTGTTTGtgctaaaaacctgtgaagcatgggctaaataaatactttttatttgtgcattggagctgtagtgagtgtgtgggtatttctctttcttttccttttttaacaattaattcAATCAACCCAGAAAAAACCACACAGCAGGGCATTATAATTCCtaataaaattgtgtatttccAGACATATAATTAGATACGGCAACATCCTCAATTTGTTTGTTGTCCTTCTCGCAGGGACAAATACAGCACACAACCTGTTACAGGaaaatttgaatatattattacCTGGGTGAAAGCCATACATTTTGACCTTCTATGTGCAAATGTGATCTGTAATGGAGTATATGATAAGATCAAAGTCTTTAATGTAAAACCCTGCTTTTACTGGCCTATTTCCTTTACTCTCCTTCTCACAGTGAAAGTTGTCCTGAGAGAATTTACATATAGCATCTATAATTACCTCCGGTTTGCAAATCACaggatgaaacaaacaaacaataaataataattacccATATCAACTGAAGAATCGCGTCTCATGTTAGGACACGGTTTTCAAAATCCGCCGCAATGGAAAACAGGAATGCACCTCCACATGTCACACTTGTACTCCAAAGTATTAACACCCTTCACTTGTAGTCAAGCTGTTCCGTGTTCAATTTAGTTGATCATGAAACTCAACTTTTCTTTCCTCACAATTTCTGACACTGATCAATAGTCCAGTTAAGTCAGTTAACTGAATTAAGTCTGGAATTGATTTACATGGAGTGGCCGGCAAATCTTTACACTGACCACGGTCTCCATCTTTTCTTGAACTAAACGAATCACCAAAGAACAATCTTTTCTTTGGTTAAAGGTGCCAgctacataaatacaaataattagaataagaaatagaaagaaagaaggaaagagaaagaaagagatctGGTCTGATCTAGAGCTGGTGAGTCAGGGTAAGAGTTTTGtcattcacaatgtattttctcactttttatttttatttttataattaaaatgtgtgtgtttgtttgtttatatata

Function

symbol description
hspb2 Orthologous to human HSPB2 (heat shock protein family B (small) member 2).

NR:

description
PREDICTED: heat shock protein beta-2

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG:

id description
K09543 HSPB2; heat shock protein beta-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004547 True 2547 mRNA 0.45 4 53206423 53210773

Neighbor

gene id symbol gene type direction distance location
AMCG00004548 NA coding upstream 11161 53193663 ~ 53195262 (+)
AMCG00004545 NA coding upstream 14232 53187590 ~ 53192191 (+)
AMCG00004542 NA coding upstream 103802 53076079 ~ 53102621 (+)
AMCG00004543 NA coding upstream 147669 53045999 ~ 53058754 (+)
AMCG00004536 NA coding upstream 163202 53034664 ~ 53043221 (+)
AMCG00004549 NA coding downstream 23018 53233791 ~ 53244730 (+)
AMCG00004554 dlat,LOC106563967 coding downstream 62927 53273700 ~ 53283989 (+)
AMCG00004555 NA coding downstream 82330 53293103 ~ 53295211 (+)
AMCG00004565 NA coding downstream 496321 53707094 ~ 53707967 (+)
AMCG00004564 NA coding downstream 506294 53717067 ~ 53719775 (+)
G9000 NA non-coding upstream 60629 53145595 ~ 53145794 (+)
G8987 NA non-coding upstream 86727 53117197 ~ 53119696 (+)
G8982 NA non-coding upstream 99426 53106744 ~ 53106997 (+)
G8900 NA non-coding upstream 303641 52839448 ~ 52902782 (+)
G8836 NA non-coding upstream 584157 52619475 ~ 52622266 (+)
G9043 NA non-coding downstream 88890 53299663 ~ 53299872 (+)
G9160 NA non-coding downstream 654167 53864940 ~ 53866447 (+)
G9170 NA non-coding downstream 722396 53933169 ~ 53981983 (+)
G9191 NA non-coding downstream 802053 54012826 ~ 54013029 (+)
G9243 NA non-coding downstream 993448 54204221 ~ 54204990 (+)
G9012 NA other upstream 22440 53183394 ~ 53183983 (+)
AMCG00004509 NA other upstream 1192793 51989353 ~ 52013630 (+)
AMCG00004501 NA other upstream 1259605 51939549 ~ 51946818 (+)
G8606 NA other upstream 2091161 51114941 ~ 51115262 (+)
AMCG00004477 NA other upstream 2452991 50741388 ~ 50753432 (+)
AMCG00004546 dixdc1,LOC107715327,LOC107693513 other downstream 48406 53259179 ~ 53270254 (+)
G9118 NA other downstream 392988 53603761 ~ 53607898 (+)
AMCG00004563 NA other downstream 425266 53636039 ~ 53670522 (+)
G9128 NA other downstream 437238 53648011 ~ 53843859 (+)
G9129 NA other downstream 466791 53677564 ~ 53861528 (+)

Expression


Co-expression Network