G9048


Basic Information

Item Value
gene id G9048
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53281051 ~ 53284971 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU11190
CgggtttgggaatccctgccTGAGCCATAGAAGGCAAAATGGTAGCGTTGCCATTTCGTGTggtcaaataaacacaatcttcATGGACCGAAAGAAACCTTTAATATCCGTTTTACAACACCCATTGTGCGTTGAAGTATATAAACACTGCggggaaaataaatctaatacaAATCAGGCCAACTAAGTAGAAAATATTGAATCAAGATTACAAAAGCATAAACAGTGAGGttagagagaaaaaatgtgtccccccttttttctttctttctttctttttgcaatAGTACATCGGTACACCGTTGGGTTGGATATTGGTACAGTCTATGCATTGCACAAAGGGAACACACACCGGGCGGCTTAATATAAGCTGTACTATTTCAACTGAAGGTTACATGCTAAACACAGAACCTCAGTATTTATGCTGAATGCAGGCTAAAAGCCAACACTGTAATCAGAACCCAGTATTTGTGgccagaatatatatatatatatggtttacgtaataataataaattacacgTTATTTTTTCCAAGCCCACATTACAGAGATTGAGCACACTCAAGGAGGTATGTACAATCTTGAGCTGTTCACTTCCACACACACCGCCGTCCAtagaacaacacacaaaaaaccgCATCCTGTCAGACCTGCACAGTTAGCTATTTGCATCGATGTGCACTGTAACATGGCAATAAAAAGTGCATTCCTAGATTCAGGTGAAGATCGAATGCTTGGTTTCATACAGCAGGTCAGTGGTTCCCTACCTCAGACCTGGAGGACCACTGCACTGTGGTTTCTGATCCAAATGGACTCTGAATCGAACCCATAATTGACCGGATTGTTTTTAGCTCTTGAACAGGTGGAGACCGGCAAACTAAGTAGCTGCCAACAACTGGggctggaataaaaaccagcagacactgagTCCTTCAGAATCCGGGCGGGAAACCACTCTGGTAGGTCATTCCCAACGTATAGAAGTGCATACATTCAAAAacggacaaaaaaaaaaaaaacattttatcttTGACATGTTTTAGAGCCAGCCGATTGTGAGAGAGATCTGTTTGGGGTACAGAAACCAGGCAGATATGTCTCTTCACTTTAGCAacttaactgaaaacaaaaacacactaaaaGTGAACATTTCCCATGTTCGAGGCTCATCACGGGGAAGGCAAGTACTGTTGGGGGCAACTAGTATACAAAGCATATCATGAGATTCATGATAGCCAGGgctcccaaccctggtcctggcgGACCCCcttaccctgctggtttctgttccaaccgagctctcaattaatttgaactaataatttcatGAATCAGatgatttaatgattttaaacagtaggggctttaagttaagtatagaattgtataaagaacttagcAAAGAACCAAttcttattacacaatttaaaaagtcaaatccaAGTTGAttgttatttcaattaagggttcaattaagtaattgagagctcggttgaaacaaaaaccagcaggataggggctcctccaggattGAGAACCCTGGCATTATAGCATAAAGAGTCCTTGTCACACAGACTGGGACAGCGAGAGACACATTTCTACAGGGcgaacacacacacccctttcTAAACCCCATCTTTGCTGCGTTCCCCTTCGTAACCACACAGGTCGCCTCCTCTAACCTCGCGCCTTTCTCAATCCACAGATCTCGGCAAACTCTCCCACACTGCAAACATATCCACCTGTTATCAGCCAGCAGGCCAGTCTGTCTCTGATGAGGCTTCCAGAGAATACGTTTTTTAAACGTAACAGAATACATAACCAATAATCCAGTCAGGATGTGTAGATTTAATCTTGGGTATCTGTTAATATTTTGCCTTCCCAACCCAGAAATACacataatattgaaaaatgtatatatttgtttatgtacataGAAATTCTCCCAGTTCTCATTCAGCTTTCTCCCCCcctaaagaaaaaaactgaattcgTAGTGCTGGCTTGTAAAGGGCTTTCTGACAGTCACTACAATACATCGCGATTAGGTTTATACGTTTAACAGTATCAGATAAACACATATTCAGTCTGTGCCAATGAAATGATCCCTGTAGCCGAAACCTGATGAAACTGACAAGTCTTATCCCACAAGTTCAAAACCAAACCACAACCATCTCCAGGCAGTGTGGACATCAGCCCAGGCTCCCTCACACAGATATCCCTTTACCTTCACAATCTCAAGTGTGCGTTTCTTGTACAAGCGggggaaataaaagtaataaaagttatagaaaaaaaaacaaaaaaaaacaggaacaacCCAGAACCTTCATCCTACTCCGAAATGAAGGAGTAGGATGTTTCCATAAAACAAGGCGTAACAGTGCCAAATCTGGAGTGCgtgtagtacagtataataaataaatccgcTCCCAGCATTCGAGATTTACCAAAGGATCAGTTCTGTGCGTTTTTCCACTCGAGAGAGCGAGAGagagagagaggaaaagaaagaacactGATCCTGTGAGATGAGGCTCTGGGGATTTCTGTTCCTCCTGGGGGTGGTGGGTGATGGTGGCATTTTTTTGGGAggaggggtcaggggtcagaggtcagaggtcacagcaGCATTGTGACTGGTTTCTCCAGAAGCTTCCGGAACTCAGCCAGCCACTGGGCGCCCACGGCCCCGTCCACCACCCTGTGGTCGCAGCTCAGTGTCACGGACATCATACTGGCCACATCGAACCTGC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0070925 organelle assembly biological_process
GO:0061061 muscle structure development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11190 True 2757 lncRNA 0.34 2 53281051 53284971

Neighbor

gene id symbol gene type direction distance location
AMCG00004550 NA coding downstream 78499 53196270 ~ 53202552 (-)
AMCG00004552 alg9,LOC107691744 coding downstream 102607 53164673 ~ 53178444 (-)
AMCG00004553 NA coding downstream 118699 53151871 ~ 53162352 (-)
AMCG00004544 LOC107600790,LOC107577576,LOC107735118 coding downstream 130159 53117060 ~ 53150892 (-)
AMCG00004539 NA coding downstream 272427 53006399 ~ 53008624 (-)
AMCG00004556 NA coding upstream 323 53285294 ~ 53290739 (-)
AMCG00004557 NA coding upstream 12485 53297456 ~ 53298097 (-)
AMCG00004559 NA coding upstream 241897 53526868 ~ 53533837 (-)
AMCG00004558 LOC102781260 coding upstream 288559 53573530 ~ 53586212 (-)
AMCG00004561 NA coding upstream 302304 53587275 ~ 53605416 (-)
G9002 NA non-coding downstream 133077 53147765 ~ 53147974 (-)
G8981 NA non-coding downstream 176215 53101901 ~ 53104836 (-)
G8833 NA non-coding downstream 726678 52553919 ~ 52554373 (-)
G8829 NA non-coding downstream 911588 52369239 ~ 52369463 (-)
G8795 NA non-coding downstream 1077371 52203194 ~ 52203680 (-)
G9074 NA non-coding upstream 208524 53493495 ~ 53493710 (-)
G9141 NA non-coding upstream 377413 53662384 ~ 53663246 (-)
G9145 NA non-coding upstream 409233 53694204 ~ 53695507 (-)
G9146 NA non-coding upstream 412405 53697376 ~ 53700585 (-)
G9149 NA non-coding upstream 436271 53721242 ~ 53722122 (-)
AMCG00004551 NA other downstream 91658 53179022 ~ 53189393 (-)
G8937 NA other downstream 329664 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 369299 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 406943 52850483 ~ 52874108 (-)
G8761 NA other downstream 1209465 52068053 ~ 52071586 (-)
AMCG00004567 NA other upstream 401445 53686416 ~ 53863369 (-)
AMCG00004575 NA other upstream 747663 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 1071489 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 1156800 54441771 ~ 54450341 (-)
G9414 NA other upstream 1291669 54576640 ~ 54620055 (-)

Expression


Co-expression Network