G1291


Basic Information

Item Value
gene id G1291
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8340266 ~ 8340592 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU1519
TGCTGGAGTTGCGCCAAACAGTGCTTTGCATTGAGgcaaaaaaagttatactttTGTTTCATCAGACTACAAAAACaattgccacatggctacacagtctccttttgttttttgtttgttttttgcatacttcaaatgaGATTtaaggtgggctttcttgagtaatggcttccttcttgcaaCCGTACCACACAAGCCAGATTGGTGCACGGGATAGGGATACAATTTAACCTGAAACTAACCCAAATCCTAACATTAGCCATCTCTGTaatgttgttatttgtttgtttatctatttGTAGGgctttcagtaaataaataaaaagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1519 True 327 lncRNA 0.42 1 8340266 8340592

Neighbor

gene id symbol gene type direction distance location
AMCG00003533 rnf144a,rnf144aa,LOC107752753,LOC106610698 coding upstream 2616 8317038 ~ 8337650 (+)
AMCG00003532 rsad2 coding upstream 48048 8284827 ~ 8292218 (+)
AMCG00003530 LOC108258189,LOC103368564,LOC106533618 coding upstream 360069 7978775 ~ 7980197 (+)
AMCG00003526 NA coding upstream 792712 7532553 ~ 7547554 (+)
AMCG00003525 NA coding upstream 809141 7518051 ~ 7531125 (+)
AMCG00003535 NA coding downstream 478820 8819412 ~ 8842419 (+)
AMCG00003542 itgb1bp1 coding downstream 617549 8958141 ~ 8959534 (+)
AMCG00003539 cpsf3 coding downstream 625119 8965711 ~ 8977843 (+)
AMCG00003540 NA coding downstream 639008 8979600 ~ 8982021 (+)
AMCG00003545 grhl1 coding downstream 769249 9109841 ~ 9131160 (+)
G1271 NA non-coding upstream 63283 8275762 ~ 8276983 (+)
G1253 NA non-coding upstream 543412 7796451 ~ 7796854 (+)
G1241 NA non-coding upstream 589801 7523861 ~ 7750465 (+)
G1242 NA non-coding upstream 811808 7526859 ~ 7528458 (+)
G1218 NA non-coding upstream 850385 7489445 ~ 7489881 (+)
G1303 NA non-coding downstream 103148 8443740 ~ 8444024 (+)
G1343 NA non-coding downstream 320440 8661032 ~ 8666927 (+)
G1347 NA non-coding downstream 358874 8699466 ~ 8700554 (+)
G1375 NA non-coding downstream 503235 8843827 ~ 8844082 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding downstream 668705 9009297 ~ 9027632 (+)
AMCG00003524 rps7,LOC107668222 other upstream 836251 7498040 ~ 7504015 (+)
G1012 NA other upstream 1845361 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 3005514 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 3817866 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 3885124 4452564 ~ 4455142 (+)
AMCG00003534 id2,LOC106566577 other downstream 308533 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 559864 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 735298 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 915236 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 1436916 9777508 ~ 9781756 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2019136 NA non-coding NC_048590.1 CM023244.2 29944887 ~ 29945544 (-)