G2445


Basic Information

Item Value
gene id G2445
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14418578 ~ 14419732 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2959
NNcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtagatagTGTGTGTAAGTTCATTTCAGCTGTGAAGCTTGGTGCCCAGAGTTGTGCTCAATGACAATTATAGTTAACTCCGGCAAACAACCATCATTACAGTTACTGACCTTTACTTTACAATGGATTGAGGGGGTAGCAGACCAGTAAATTACTCGTTATCATCTGTGTGGTTGCTATTGAGCACAATCCTTTTGGTGAAGTCACTGTATACCCTAATTAGACAGTGTCCTACATACCCTGGCACCTGCAGACCAGGAAGTATTTTGGAATGATTTTGACAGTTTCAATTGAATTCCTTCAGTTTTCTATTCCAGTGGACTTTGCTAAAAGCAGCTGCTGCACTAAGTGTGTTGTTGCTTTCCCTATCTGAGCTGCCCAATGCATGCATCGCTACTAGTAACCAGGCCTTCAGTCTTGGTAAGGGGAGAATGCAAGAACTAAGACCAACCACATTCCTTTGGTCACTCAGTGAGTATCAACCCATGAGAGAACCTCAGGGTTTCTACAGACACAACTGAAGCCATCAGTGAATTATTTTGATGGAAGTCTCCTCAGTTATTATCTAACAATATCAGCCAGCATGTGGCGCCACCAGCACCAGAGATCTtttgcactgaaataaataaggaCTGACTACATGACATTGTTTAGCTTTAAGCGTGTGCAGTAGTTTTCTGTTCACTGTTCAGCTCTGGACTCCTGTAAtttgctaaaaaaataataatctgtaaaaaaaaaagttgttctCCGTTAAGTTACGTGTTACCAGGTCTTCTGTCCTATCTGGTTTTGTAGCTGCTTGTTCAGAGGCACAATTCAAGTCATTATCAAAACAGGTTTTCACGGCCTTGGCTTCTGATAATGTGCTTTGTTCCCCGGaggcagaaaaagaaagatgattGTTGAAGGAGTGTCTTGGCAAGAGACCTAATGAAAGTCCTTCGATGTGGTTTATTACCACCTGAGTACAAACACCCCTTTGGAAAGCTGCGCCCTCCCTGAGAAGTGGGTCTGGAATGGTTAGAAGCATCTGAAATTCAGACATTTCTGAAAGgccgttttttgtttttggtccgCTGGATGCACTGTGCACGGCCTTTGTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2959 True 1155 lncRNA 0.47 1 14418578 14419732

Neighbor

gene id symbol gene type direction distance location
AMCG00003685 NA coding downstream 23674 14387555 ~ 14394904 (-)
AMCG00003677 LOC107733121,LOC107582237 coding downstream 64045 14338426 ~ 14354533 (-)
AMCG00003665 NA coding downstream 856381 13545351 ~ 13562197 (-)
AMCG00003664 tgfb2 coding downstream 903678 13509791 ~ 13514900 (-)
AMCG00003663 NA coding downstream 1019731 13387807 ~ 13398847 (-)
AMCG00003686 cdc42bpa coding upstream 6553 14426285 ~ 14461583 (-)
AMCG00003684 cdc42bpa coding upstream 57192 14476924 ~ 14483379 (-)
AMCG00003687 NA coding upstream 108909 14528641 ~ 14531680 (-)
AMCG00003689 NA coding upstream 197731 14617463 ~ 14644456 (-)
AMCG00003692 NA coding upstream 586685 15006417 ~ 15016678 (-)
G2444 LOC108270052,LOC108428681 non-coding downstream 2905 14415379 ~ 14415673 (-)
G2443 fzd3b,LOC107729283,LOC107734193,LOC107665105,LOC107589599,LOC108270052 non-coding downstream 8325 14409236 ~ 14410253 (-)
G2337 NA non-coding downstream 909648 13507892 ~ 13508930 (-)
G2324 NA non-coding downstream 1003422 13414861 ~ 13415156 (-)
G2291 xdh,LOC107752765,LOC107592779,LOC107733164,LOC107674096 non-coding downstream 1181585 13233495 ~ 13236993 (-)
G2447 NA non-coding upstream 999 14420731 ~ 14421315 (-)
G2494 NA non-coding upstream 279227 14698959 ~ 14699237 (-)
G2565 NA non-coding upstream 696251 15115983 ~ 15116183 (-)
G2615 NA non-coding upstream 895664 15315396 ~ 15318210 (-)
G2636 NA non-coding upstream 958465 15378197 ~ 15378555 (-)
G2373 esrrg other downstream 405557 14009458 ~ 14013021 (-)
AMCG00003667 NA other downstream 686539 13664743 ~ 13732039 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 1301918 13071796 ~ 13116660 (-)
G2236 NA other downstream 1383089 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 2340426 12075319 ~ 12078152 (-)
G2500 NA other upstream 391054 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 1095941 15515673 ~ 15591730 (-)
AMCG00003734 NA other upstream 2187678 16607410 ~ 16628401 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other upstream 2448600 16868332 ~ 16871475 (-)
AMCG00003751 NA other upstream 2717516 17137248 ~ 17140382 (-)

Expression


Co-expression Network