G2721


Basic Information

Item Value
gene id G2721
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16085140 ~ 16085992 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU3309
atgtatatatagtttacataaataaacatcattTGGTTGCTATTTTAAGAGTTGGTGGCTCAGCAGTCGTTGGGTTTGAAGTGGTCTTGCTTATAGCCTAACCTGCAGCCTGTAGAGAAGCACTCGGCCCACCCAGGCAATCAGTGGATGGAGGGGCAATTCAGTAAGCGTCTGGAACAAGAGCCAGTCgtcactgcggccccccaggagtCTAATTGAATCTCATTTCTCAGGGGAGTGGATCAGACCTCCGGCAGGGCCTGGAAGCGCATCCTTTCAGATGTGATGGAGAGGCCTGGGGGTATTaagtattgtattaattttaaatggaaaattatgCACCTTTACACAGATTTGTGCCAAACTGCACTTGACTAAtcttcacccccccaccccatcgcATCCCATCCCAGTTCTGTtgatgtaaaaacaacacatcgTGTGTGAggctcccacacacacacgctattCACATACAACATTCCTCAGTGCAGAGAAGGGATGCTTTGCCCACAGTGCCCCAGGGCTCAGAGCAGACCTGTACCCTGCGTGTTAAGAGTCCTTGTTGAATATGtgatcaaaacaacaacaaaaaaaaacaaaaaaaaataaaaaatttaagaaaaaagaaaatatatatatatatatggggaaaaaaaaaaagaaaatcactgtCGTATCAATTTGAAATAGTTAAACCAGTCCTATATCATTGTATCTCCTATTTCAGAATTTAGTGCCTTTTTTGGACAGTAGActgttctgtaattaaaatgtagtatatatatgctttttgtacagtttttttgtttaagaagacttttttttaaacttgtgtttattttagtattgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3309 True 853 lncRNA 0.40 1 16085140 16085992

Neighbor

gene id symbol gene type direction distance location
AMCG00003713 NA coding upstream 5825 16071552 ~ 16079315 (+)
AMCG00003711 NA coding upstream 333279 15726442 ~ 15751861 (+)
AMCG00003706 NA coding upstream 686734 15394813 ~ 15398406 (+)
AMCG00003701 LOC106607895,LOC106571478 coding upstream 714274 15353478 ~ 15370866 (+)
AMCG00003705 NA coding upstream 750822 15334001 ~ 15334318 (+)
AMCG00003715 elp3,LOC107696156,LOC107698368,LOC107599080 coding downstream 50854 16136846 ~ 16161082 (+)
AMCG00003718 NA coding downstream 121855 16207847 ~ 16210277 (+)
AMCG00003720 mcm3 coding downstream 172462 16258454 ~ 16265698 (+)
AMCG00003719 NA coding downstream 201670 16287662 ~ 16288702 (+)
AMCG00003727 NA coding downstream 329458 16415450 ~ 16427708 (+)
G2719 NA non-coding upstream 274 16081182 ~ 16084866 (+)
G2698 NA non-coding upstream 52205 16032708 ~ 16032935 (+)
G2681 NA non-coding upstream 180320 15904483 ~ 15904820 (+)
G2641 NA non-coding upstream 665271 15416976 ~ 15419869 (+)
G2619 NA non-coding upstream 707503 15373195 ~ 15377637 (+)
G2755 NA non-coding downstream 143943 16229935 ~ 16231498 (+)
G2797 NA non-coding downstream 343042 16429034 ~ 16430555 (+)
G2833 NA non-coding downstream 507272 16593264 ~ 16597369 (+)
G2836 NA non-coding downstream 513066 16599058 ~ 16599329 (+)
G2861 NA non-coding downstream 782307 16868299 ~ 16934020 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 45500 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 766912 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 1218382 14851752 ~ 14866758 (+)
G2440 NA other upstream 1665408 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 2878301 13155060 ~ 13206839 (+)
AMCG00003744 NA other downstream 946578 17032570 ~ 17042594 (+)
G3047 NA other downstream 1595825 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 2045927 18131919 ~ 18142633 (+)
G3108 NA other downstream 2060668 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 3185973 19271965 ~ 19397686 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G352092 NA non-coding NC_048568.1 CM023222.3 40888241 ~ 40892813 (-)
eurasian perch (Perca fluviatilis) G183191 NA non-coding NC_053129.1 CM020926.1 9327399 ~ 9328688 (+)