G3548


Basic Information

Item Value
gene id G3548
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19897110 ~ 19897535 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU4301
gctgtactgtgaggagaaagaagaaaatgggtattatctgtttcttactgtaatccagcagaagcttaatattacttattattacttgtcaaaataaatgattattgcacatctgtgacttgaccgcatcttccctctaaaaagaatcttaaaagagaaaccaattgacctatgagttttcagttcaactatttatttagattgactgaaaaaccaagcatttccaaattctcttacataGTGGTGGCCAGTACGGGGTGATGACGGATATTTGCTACAAGTCACAGATTGCTCTGGAGTATTAATGTGCATGCATTGACAGAATAGCACTGTATATCCGACTCTTGCCTGAAAGACGAACCTCGCGTAACGGTGTCGTCAGAATAGCCAGGATTGTACGAACTGATCATTGACCTTAGGAGTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4301 True 426 lncRNA 0.38 1 19897110 19897535

Neighbor

gene id symbol gene type direction distance location
AMCG00003827 NA coding upstream 265663 19630470 ~ 19631447 (+)
AMCG00003826 NA coding upstream 446837 19448872 ~ 19450273 (+)
AMCG00003815 pcmt1 coding upstream 716598 19168766 ~ 19180512 (+)
AMCG00003816 NA coding upstream 758910 19132983 ~ 19138200 (+)
AMCG00003812 tab2 coding upstream 812157 19073792 ~ 19084953 (+)
AMCG00003832 NA coding downstream 35639 19933174 ~ 19943837 (+)
AMCG00003833 NA coding downstream 46475 19944010 ~ 19945017 (+)
AMCG00003835 NA coding downstream 235238 20132773 ~ 20133355 (+)
AMCG00003836 NA coding downstream 435588 20333123 ~ 20333536 (+)
AMCG00003844 lama2,LOC107653134 coding downstream 1390925 21288460 ~ 21296218 (+)
G3536 NA non-coding upstream 171401 19725327 ~ 19725709 (+)
G3534 NA non-coding upstream 184053 19712803 ~ 19713057 (+)
G3496 NA non-coding upstream 471766 19425007 ~ 19425344 (+)
G3391 NA non-coding upstream 810395 19084971 ~ 19086715 (+)
G3375 NA non-coding upstream 925986 18951252 ~ 18971124 (+)
G3549 NA non-coding downstream 50 19897585 ~ 19897910 (+)
G3550 NA non-coding downstream 731 19898266 ~ 19898543 (+)
G3562 NA non-coding downstream 196503 20094038 ~ 20240154 (+)
G3563 NA non-coding downstream 342119 20239654 ~ 20259023 (+)
G3582 NA non-coding downstream 493655 20391190 ~ 20419930 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 499424 19271965 ~ 19397686 (+)
G3108 NA other upstream 1744796 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 1754477 18131919 ~ 18142633 (+)
G3047 NA other upstream 2213122 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 2854516 17032570 ~ 17042594 (+)
G3751 NA other downstream 1651666 21549201 ~ 21549533 (+)
G3771 NA other downstream 1848315 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 1992988 21890523 ~ 21901865 (+)
G3799 med23 other downstream 2025101 21922636 ~ 21923787 (+)
AMCG00003874 NA other downstream 2785481 22683016 ~ 22769227 (+)

Expression


Co-expression Network