G7911


Basic Information

Item Value
gene id G7911
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 46721829 ~ 46723088 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU9730
gcagCCAGAGGGTTAATTTTTTAACTACTTCAGGTATTATTCTatacaaattcaatattttttcaatacattttttgttgctgtgaaagatagatttaaaaaaaaaaattatatatggtGCTGTACCAAAGCCTTATGTAACATACTATATTGCTGTATTGTTTCTCAGATTTTCAGCCTCATTACTCAGCAGGAAACTAAATACACTCCCTTACGTTTTATGTGTCTTACATTTTAAGTGGCACATACCCTAGTGTTTATATAACTGGTGCTGcacatatttatgtaatataCCTGCAAGACACACAGGTAAATTTAATTGGCAAACCTTTTGAGTTCAAGTGCATCTTTCTGCACTTGGAGGCACCTCCCTCCCTGTACCTGTAATTCGGTAAACAGATCCTTGCCAAACATCTCAGTATGGAGAAATGATAAGACTGCCAGATTGTTTACCAACCTTCAGGAAACTACCTTCATCATTATACTCTGCAATGAATGTTTTCAGTGCCGGATAAAACCACGTATTGATACAACCTGCACTTCATTGTGCTGGGTATGTTACATTCACTAAGACCCGTGACCCAGTTAAAGATCCATCCTTTTATTGTGCGAAATGAGGATAAGACGCACAGTCattatttttaggttttgtgAGAGTGGATTCCGCATACTGGGGTTAATAAGCAAAGGCAAGGGTTTGTACTTTAAACACGGGCCGTATTCAGAAAACCACTGAGACATTATGGATATTTCAGCTAgtgcggtttgttttgttttgttctggggggtgggggaattgTTTTACCTGAGTGGccttacaaaacaaatttaaatattaaagagcGTATGGcccaatgtaaaacaaaataaataaatgaacaaataactaatttgacacttataaaaacaaaacaaaagcaagacacatttcttatttaaactGAGGTCTTCGAGGGCAGGAGGGAGAGTCTTTAATTTCAGTCACCAGTTGGGGGTTTCGATTACCAAGCAAGGTGTTTGTCCTCCTGCTGAGTTGTGGGGGAGCGCATTATCAGTAACATTGCATGTCCATAGAGAAGCTCGCCCTGCTGAGAAAAGCAGTGTTGCATTGATATCTATCACCAGACGCCAGAGGGCCAAGCAATGGGGTTTGGTGGAAATGTAATGAGTTGACTTTTTTTCTGATGCTTAAGTCCCATATAACATTTACTCtgcttcagaaatgttttgtattttgatataataaatatttacaaaaaa

Function

GO: NA

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU9730 True 1260 lncRNA 0.39 1 46721829 46723088

Neighbor

gene id symbol gene type direction distance location
AMCG00004395 NA coding upstream 19402 46688600 ~ 46702427 (+)
AMCG00004396 igsf9b coding upstream 39861 46669974 ~ 46681968 (+)
AMCG00004397 igsf9b,LOC108427954 coding upstream 64035 46627818 ~ 46657794 (+)
AMCG00004389 NA coding upstream 402522 46300852 ~ 46319307 (+)
AMCG00004390 thyn1 coding upstream 432584 46285450 ~ 46289245 (+)
AMCG00004401 arhgap32b,LOC107715324,LOC107703512 coding downstream 70299 46793387 ~ 46797648 (+)
AMCG00004400 NA coding downstream 146237 46869325 ~ 46882912 (+)
AMCG00004399 sc5d,LOC107561054,LOC107715322,LOC107703513 coding downstream 160774 46883862 ~ 46892939 (+)
AMCG00004405 NA coding downstream 1601037 48324125 ~ 48330895 (+)
AMCG00004406 NA coding downstream 1627773 48350861 ~ 48355175 (+)
G7906 NA non-coding upstream 4574 46715778 ~ 46717255 (+)
G7879 NA non-coding upstream 331078 46390388 ~ 46390751 (+)
G7765 NA non-coding upstream 800024 45919390 ~ 45921805 (+)
G7662 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding upstream 2104430 44616316 ~ 44617399 (+)
G7644 NA non-coding upstream 2133845 44587706 ~ 44587984 (+)
G7949 NA non-coding downstream 269129 46992217 ~ 46997805 (+)
G7974 NA non-coding downstream 925100 47648188 ~ 47648574 (+)
G7977 NA non-coding downstream 962432 47685520 ~ 47685881 (+)
G8044 zbtb16 non-coding downstream 1740093 48463181 ~ 48468811 (+)
G8083 NA non-coding downstream 2124438 48847526 ~ 48848126 (+)
AMCG00004380 NA other upstream 753523 45962010 ~ 45968306 (+)
AMCG00004355 hyou1,LOC100380749 other upstream 2081097 44618185 ~ 44640732 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 4030720 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 4505467 42210430 ~ 42216362 (+)
G7094 NA other upstream 5214598 41459576 ~ 41507231 (+)
G7999 NA other downstream 1423800 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 2174029 48897117 ~ 49026355 (+)
G8099 NA other downstream 2209362 48932450 ~ 48934095 (+)
AMCG00004424 NA other downstream 2320502 49043590 ~ 49060055 (+)
AMCG00004425 zbtb44,LOC106580932,LOC106612543,LOC102781915 other downstream 2575648 49298736 ~ 49318835 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G119343 NA non-coding NC_035910.1 CM008313.1 4813993 ~ 4819342 (-)