G144683 (acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066)


Basic Information

Item Value
gene id G144683
gene name acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11674239 ~ 11676905 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181958
tctgaaatctgcTCCTGTGGGAGTttgcttaaaaagaaaacttggttcacaatgctttttaaaatgtttataatgctGTAGAAATCAACTGCAGAATACATGCTGCTATTTCGTTTTGAGGTATGTTAAGCTTATCtattggttttgtttcagaacaCATTGTTCAAACACATTCacggtttgtgtttttaattaggcACTGCATATTCCTGTTTAAGGAAGtatttaaccaaaaaaaaacaagttccaGACGGAGAAGTAAAAGGCAAAGTCTGAATTGCATTGAtacaatttacataaattacatgtataaaaccAGCTACAGCAGGGATGACTGTTTCTTCAGGTGAAGTCTCATCACTGCATGAATTTCCCAAGGTGCTCACGTGCAATAATCATTCTCTGTATCTGCGCCGTACCTTCATAGATCTGGTAGATTTTGGCATCTCTCATTAACTTCTCCACAGGATATTCACTGTTGAATCCGTTCCCTCCAAATATCTGAACCGCATCACTTGCGACTTGGTTTGCAATGTCACCGGCAAACGCCTTGGCAATGGAGGCGAAGTAAGTGTTTCTGCGTCCTTCATCTACTTCCCAGGCAGAGCGCTGATAAGCCATCCTGGCCAGCTCCACTTTCATTGCCATCTCTGCCAACAAGAAGGAGACTGCCTGGTGCTAAAGAACAGAACAATGTGAACTCACTGAACAATTGGTTCTATTATAACAAAGGTTTCAatgctgaaattattttttaaagtgac
>TU181959
TGTACAGCACTCAGAGTGTACAGCAAGTGGGGGTCATGCCCTATACTAGCACTAATGCCACCACACTCATGCTGGCAGGATTTGATGAACTCTATAATCTCTTCCTTGTTCATCCGATCCAGTTGCCCCATTAGGTCCATTACGGTTAAACCCCAATAGATGCCGCTCATTCGCAGATATTCTGACAATGTGTATTCCTGGTGGAGAgaaaaaaccaaaacattttcaaatctaaAATAACCCTAATTCCAAATACATGGGAACCCTGCCAATCATATTATTAAAGATGTTTTAAGCAAATCTCACAATCTTTCCACCGTGAACACTGTCTCACTTGTACAAATACATGATACATACATAGTCATCCTTTTTGGATCCATAGGCTGCAATGTAGTCTGCATGCTTTTCCAGCAGGACTGAATTTGGAGCATCGGGCTTAATCACAACATCTTTAACCTGAGTGccctggagaaagaaaaaaaaaacagattagtcataatacagttttaaaatcagTGACCATGTTTCACAATCAGTGCTGGGTAAAATATCCGagcataaaacacatttaaacgcAGATCCAATGCAGCATTAAAGCCAATCATCTCCTGATATTGGAGTCAGTGTTTTAATATAGTCTATATAACCAAATCAACTGCGGGTTGCAAAGCTATGAACCCATACAATGCAGGCTAATCTGATAACATCTGGGTGTTTAAAAAGCGTTGCTGTGGAGAGGCCGGCAGGATGTAGTGTATATTGTTTTACGACACCGAAACCGTCGTGGTTTGTTATTGCAATACATATGACACAGTATTAGTTATTTCGCTCTTTCCGTTATCAGGCATGAACAAGTATTCACGTATTGTGCGCCCAGCAGATACAATGAACATTAGTTATTAGTGTCACAATACGTAGATCTATTAAAAATTAACTGTTCAGCAGGATTTGCCGAGGCATGTCACTTCCCAACCGGGATTTCATCATCTTTCAGGTCGTAAACATACACTAGCCGGCTTTCTTTACGTATTTATTGAAAATGCGTCTTTATTCGTAATGTTTcactcatttgtgtattttcttttaacggGAGTAttgtaagaaaagaaaagagaggcCAAACTTACCATTCTCGGCTGATGTCCTAGACCGACTCCCGTCCCACAATTTCTACGTCATCCAAGGGCGATAAACAGCCCTGGAGCGCAGCGGCGCCAGCACTGTACATACATGATCATTTCCATGGACATCATATCCATGGAGTCAACTAGTCTTGCTAAATAAGCCGAAATGACGAACCCGGGGGATTATGAATGCAGTTTGACAGCACAGACTGAAATGGATATTCACTGTTGAATCCGTTCCCTCCAAATATCTGAACCGCATCACTTGCGACTTGGTTTGCAATGTCACCGGCAAACGCCTTGGCAATGGAGGCGAAGTAAGTGTTTCTGCGTCCTTCATCTACTTCCCAGGCAGAGCGCTGATAAGCCATCCTGGCCAGCTCCACTTTCATTGCCATCTCTGCCAACAAGAAGGAGACTGCCTGGTGCTAAAGAACAGAACAATGTGAACTCACTGAACAATTGGTTCTATTATAACAAAGGTTTCAatgctgaaattattttttaaagtgac

Function

symbol description
acadm Predicted to enable medium-chain-acyl-CoA dehydrogenase activity. Predicted to be involved in fatty acid beta-oxidation and medium-chain fatty acid catabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in female organism and liver. Human ortholog(s) of this gene implicated in medium chain acyl-CoA dehydrogenase deficiency. Orthologous to human ACADM (acyl-CoA dehydrogenase medium chain).

NR:

description
PREDICTED: medium-chain specific acyl-CoA dehydrogenase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181958 False 764 lncRNA 0.40 2 11675924 11676905
TU181959 True 1638 lncRNA 0.42 2 11674239 11676905

Neighbor

gene id symbol gene type direction distance location
AMCG00004966 NA coding upstream 8138 11664846 ~ 11666101 (+)
AMCG00004965 pigk coding upstream 192006 11472530 ~ 11482233 (+)
AMCG00004964 NA coding upstream 263897 11401533 ~ 11410342 (+)
AMCG00004969 LOC106596347 coding upstream 284626 11364432 ~ 11389613 (+)
AMCG00004968 fubp1 coding upstream 348576 11316701 ~ 11325663 (+)
AMCG00004976 NA coding downstream 5928 11682833 ~ 11716049 (+)
AMCG00004975 NA coding downstream 40417 11717322 ~ 11757176 (+)
AMCG00004974 slc44a5,LOC106613541,LOC106574020 coding downstream 83016 11759921 ~ 11782145 (+)
AMCG00004993 cryz coding downstream 162041 11838946 ~ 11840697 (+)
AMCG00004991 erich3 coding downstream 164261 11841166 ~ 11850241 (+)
G144682 NA non-coding upstream 724 11672872 ~ 11673515 (+)
G144681 NA non-coding upstream 1754 11671555 ~ 11672485 (+)
G144680 NA non-coding upstream 2797 11669475 ~ 11671442 (+)
G144668 NA non-coding upstream 96992 11570936 ~ 11577247 (+)
G144658 NA non-coding upstream 168356 11505682 ~ 11505883 (+)
G144788 LOC104960733 non-coding downstream 422459 12099364 ~ 12192733 (+)
G144804 NA non-coding downstream 517221 12194126 ~ 12194338 (+)
G144805 LOC107679324,LOC107728925 non-coding downstream 519367 12196272 ~ 12196773 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding downstream 562586 12239491 ~ 12242198 (+)
G144811 NA non-coding downstream 579383 12256288 ~ 12257869 (+)
G144677 NA other upstream 10871 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1658815 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1923462 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3940180 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3981878 7672816 ~ 7692361 (+)
G144940 NA other downstream 1103675 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2478250 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3702694 15379599 ~ 15384811 (+)
G145932 NA other downstream 6088352 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 7138124 18815029 ~ 18821642 (+)

Expression


Co-expression Network