AMCG00005523


Basic Information

Item Value
gene id AMCG00005523
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3648847 ~ 3652715 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005523
tctctctctctctctctctctctctcagacggCTCTTTCCTCGCAGTGCACATCGGGAGCCTGCAGCCGCAGCACCGCCAGCAGCGGAGGAAGCTCCCATTTTTAGGGACACGCCGCACTGCCATGCCAGAAGCAAAGGACAAGCCTGGAAATTGAGCGACACAGCAGGGAATACCGACCAGGAGCGACGCAGGGAGGAGATACAGACGAAGGAAGGAAAATAAGAgtaccaaacaaaaataaatacaagtgattttttttttttaaggggtggaaaaaaacaaaacaaaacaaaacactctaCAGCACCTCCTTAGCCTCCCTCTGCAAAGCATCTCACACTCTACTGCtccaggaggagagagagaggaggacacAGAAGGAGATGATTGTGAAGTGATGAAGATAAGGAAAGCCATGATGTCTCCCGCCACTGCATTTGCCtgcatgctgctgctgctgttcggGCTGCGGGTGCTGGCCATCTGTCCGCCCATGTGCCAGTGCGCCAGGAGCCACCGGGTGGTGGACTGCTCAGGGCGCAACCTGAGCCAGCTACCGGACAGTCTGCAGCACAACATCCGCGTGCTGAACCTGTCCTGCAACCACCTGGGCGACCTGGACAGGCTGCTCAGCCACTTCGCCCACCTGCGTGTGCTGGACGTCTCCCACAACAGGCTGCCGCGGATGCCCGTGCACCTGCCCCGGGCCCTGTGGGAGATCCACGCCTCAGGCAACCGCCTGAGGCTGCTGGACAAGAATGACACAGCCTACCAGTGGAACCTAAAGGTGCTAGACCTGTCTGGCAATGAGCTAGAGCGCGTGGTGTTCATTAACAATACGATGCCAAACCTGCGCTCACTCAACCTCAGTCACAACAAGTTCTGGACTGTGCCCACCAACATGCCATCCAACCTGGAGACCGTAGACCTCTCCCACAACTTTTTGGTGCAGATCCTGCCTGGCTCACTGGACCGCCTGCCCCAGCTGGCCTACTTCTACCTGCACAACAACCGCTTCTCGGCCGTCAGTGAGAATGTCTTCAGCCAGCTGGCTGGGTTGCGGCTCATCACGCTCAATGCCAACCCCTGGGCGTGCGAGGATGAGGAGAACATCACAGACCTCCTGAGCTGGATGCAGCACACTCCCGCCCGTGTGCTGGGCTGCCCGTGTTACACGCGGCACGTCTGCGGTGAAGCCCACCAACTCCCTCCAACGGGGGCCTGGCACATCGCCTCATATACCCAGTCCCCCATGAGTGGTGAGGCCAGGGATCACAGATGGCCCTCCATGCAGGCTGTCACATCCAGCTCCCTATCCAAGTGGGCCCCGTCCAACCAGCCCTCCAACATGAGTGCGACCAACCTCTCGGCAGTTGACCCAGTCGTCTTCAAGAGCGCCGGCATCCCTTTGAGTTCCTCCGGCCGCGGCCTCTCCACCGGCAGAGCGCACCGCACAAGCACAACGCCCAGTCCCAGTAGCAAGAAAACCAGCGGCGTCATCCGAAGCACAAACCAGGGCCTGCCCCTCGGCGCTGCCCAGATGCCGGCGCTGAACCTTTTGCTCACTGCAGCAGTTCTGGCACTGACCTGAAAAGCCATTCCTTAAATCGTAAATTGTTCTTGGATGTTCAacaacgacaaaaaaaaaaaaaaaatacgagaaatctaatacaatttttgtttctttttttaaatatcgaCTGTTACGGTTATTCTAAACACTGTACGTGTCTGCTGCAAAGCTATCAAATCGCTGCTAAACTATCTCCTTCTGCAGAATGTAGTAAGACTAATGTATGGCTATAATGCGCAtacattacacacatatatatatatatatatatatatatataatagtttataaatataaactatgaTGTACTAAATGGATGCTCTTCTCTCTATATTATGCTTGTTCCTTGAAAGGTACTACATTTttgaatttatataaatatgaaacaaaagtgcaaaaactgattttaaaaaaagtgcattgtgaATGTCTGGATTTTGTAACCATGTATGTTATCAGTTGACACACATCAGAAACAGAGGACTTATGTGCCAGATCTATCGCCAGTCCTGAAACATGACATGCATTTGAAATTGCAACTAAGAAAATTCCAGATAAACCTACCAAGGACTTGCAAGAGaagaaatgtcattttaaatgcctGGCTGCATGCAATCCtaatagaaaatgtttattttatatatttattattggggaggggggatgaaattaaaataaacataacatatcataatcaccatcattattattattttcattatcattattattactgtggtTGATACTATTATTTGATTAACAACCTCCTGatatgaaatgtatacaaataataggactagtaataataataataataataataataataataaagtgttaCCTTCTAATGGCCTTTTTGTAAATTACCTTCTCACActaataaagtatttattactGACCACAAGACGGTGCTCTCtgaaagaaactgaataaaaaaatgttacactttT

Function

GO: NA

KEGG:

id description
K16666 OMG; oligodendrocyte myelin glycoprotein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005523 True 2525 mRNA 0.48 2 3648847 3652715

Neighbor

gene id symbol gene type direction distance location
AMCG00005526 NA coding upstream 4726 3642889 ~ 3644121 (+)
AMCG00005522 NA coding upstream 11036 3633733 ~ 3637811 (+)
AMCG00005500 NA coding upstream 342003 3304889 ~ 3306844 (+)
AMCG00005499 NA coding upstream 353533 3284870 ~ 3295314 (+)
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding upstream 392741 3229689 ~ 3256106 (+)
AMCG00005551 wsb1,LOC107756317,LOC107746651,LOC107682796,LOC107592922,LOC107587373,LOC107672108 coding downstream 53938 3706653 ~ 3722896 (+)
AMCG00005550 NA coding downstream 86693 3739408 ~ 3740831 (+)
AMCG00005558 NA coding downstream 113299 3766014 ~ 3788578 (+)
AMCG00005559 NA coding downstream 146552 3799267 ~ 3807613 (+)
AMCG00005557 NA coding downstream 224699 3877414 ~ 3878187 (+)
G152657 NA non-coding upstream 388418 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 448660 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 461859 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 558192 3071950 ~ 3090655 (+)
G152397 NA non-coding upstream 1325502 2255365 ~ 2323345 (+)
G152764 NA non-coding downstream 71198 3723913 ~ 3761827 (+)
G152866 NA non-coding downstream 606151 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 639315 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 879606 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 1537812 5190527 ~ 5190796 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 378003 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 799239 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1138171 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1702047 1929455 ~ 1946800 (+)
G152337 NA other upstream 1844944 1799811 ~ 1803903 (+)
AMCG00005538 NA other downstream 629802 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 907498 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 1562098 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 2781806 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 2835003 6487718 ~ 6488782 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002956 omga coding NC_007121.7 CM002894.2 37334270 ~ 37337579 (-)
grasscarp (Ctenopharyngodon idella) CI01000304_18010568_18011800 NA coding CI01000304 null 18010254 ~ 18011834 (-)